Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0664 ATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAGTTTATAATCTAGATGAATCAGATGATGATGCTGACTTTTTGCCTGGGAAACCCGGGAGAACTGAGGAAAACTTTGAGAGGATAGTTCGAAGTGATGCTAATTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTAAGCTGTGAAACTTGTACTTATGCTTTCCATTGTAAGTGCTTACTTCGACCACTAAAAGCTCCACTTACAGATAATTGGAGGTGCCCTGAATGTGTTAGCCCGTTAAGTGATATTGAAAAGATACTAGATTGTGAGATGCGCCCAACTGTAGCGGGTGATGGGGAGGCCTCAAAACTGGGCTCAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTTTCGTATCTGCACTGCGTGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTCAAGTTAAATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCGCAAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAATGGACCATGGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTTCATACGATGAATGCTATTGGGAGTCCGAGTCTGATATTTCTGCATTTCAACTAGAAATAGAAAGATTTACAAAACTTCAGTCTAGGTCTAGGAGAAGTGCTTCTAGTAAGCAGAAAAGTGGTGGTAAGGATGGTGCTGAAGAAAAAAAGAAGCAGAAAGAATTTCAACACTATGAACAAAGCCCCATCTTTCTTTCGGGCGGCACCCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTGCGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCCTATCAACTCTCCGAAATTGGGAACGTGAATTTGCAACATGGGCGCCTCAAATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAACTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGCAAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTTTTGACATCATATGAAATGATCAACTTCGACTCAGCATCGTTGAAACCTATAATGTGGGAGTGCATTATAGTTGATGAAGGTCACCGACTTAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTGACTGGGACTCCTCTTCAGAATAATTTGGATGAACTTTTTATGCTAATGCACTTCCTTGACGCTGGGAAGTTTGGAAGCTTAGAGGAATTCCAGGAAGAGTTTAGAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAAAATGTTGGCTCCGCATCTCCTTCGAAGAGTGAAGAAAGATGTGATGAAGGAGTTACCTCCTAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACACGTAATTATCAAATATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATAAATGTTGTTATGGAATTGCGCAAACTATGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTGAAGATCCAAAAGAATCATACAAACAGCTACTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACCTGTTAGAAGATTACTGTTCTTACAAGAATTGGCTGTATGAAAGGATAGATGGCAAGGTTGCTGGAGCTGAAAGACAAGTAAGGATAGATCGGTTTAATGCAAAAAATTCCTCGAGATTTTGCTTTCTTCTTTCGACCAGAGCTGGAGGATTGGGAATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAGAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTGGTTGTCGGAAGGCTAAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCAAAGGAGTTATTTGCTGACGAGAATGATGAAGCGGGCAAATCCCGCCAAATTCATTATGACGATGCTTCAATAGATAGGTTGTTGGATCGTGAGCAAGTTGGAGTTGAGGAAGCTATGGTGGATGATGAAGACGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATACATTGATGAAGTTGAGGCTGCAGCAGAGGAGGCAAGGAAAAAAGAAAAGGAAAATAAAAATACTGTTAACAATTCAGATAGAGCTAATTACTGGGAGGATTTGTTGAGAGACAGATATGAAGAGCATAAAACTGAAGAGTTTAGTTCCTTGGGCAAGGGCAAGCGAAACCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTAAGTTCTGATGGTGAAGATGACAACTATGAAGCAGATCTTACTGATGGCGATTCAAATTCAACTGGAACTACTTCGGGTAGAAGGCCTTACAGAAAGAAAGCCCGTGCAGATAGTACAGAGCCACTTCCTTTGATGGAAGGTGAAGGAAGATCATTCAGAGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTATGCTCAAGTTGGTTAATGATTGTATCTGGACTTGTCCTTTGGCTTTTATGTATTGAAGAAAAGGTTCTGCCTGTCAATATCTGCAATTCATCTCACTTTAAGAGTCTATTACAGTTTTTTTCTTTGTTTTTCAGTTATGGATTCCTTTTCTTGTCTCATATCGCTGAAGATATAACTGATTCTCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTAAGAATACAAGATGTACTAGTTAGGATTGCAGTTCTTCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAAGGATCCTGGAGCTCTGCTTTACACAGATGACATCTTATTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAAGGAGGAGCATGATATAGTGTTACTGCGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCAATTGTGGATGACAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCTATAATAAATTTACCGGTACCGGGACAAGTCAGTACTCAGGCGCAAAATGGTGCAAATTCAACAAATGTAGAAGCACTGGCCAACCAACCTGGGGAAAATGGTGCGAGTGATATGGTAGCTGATGGTGCGCCGGGTTCTGGTGATTCTAGGAACCAAGCACAGCTATATCAAGAGTCTTCAATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTCGAGTTTGTTAAAAAGAGGGTTCTTCTGTTGGAAAAAGGGCTCTATGCTGAGTACCAGAAAGAATACTTTGGTGACCATAATACTAATGAAGCCGTGAATGGAGAATTTAAAAATGAACCAAAGGATTCAAATGTTCCAAGTTATAAATCAGGGGAGATTGACAAGAAAACGATTGATCAACTGCCTCAATTAGAAGAAATAGCTTCTGAAGAATTTTCTGCTGCTGCTTGTGATAGTGACCCAAATCGATCGGAGTTGGTTCGACTTTACAATGAGATGTGCAAGGTTGCGGATGAAAACACCACTGAATTGGCTGGAGGACTAGCAGATGTCAGCTTGATGAAGAACTTGCTTCCCATTGAAACTGTTTGTGAAGGCATCAATAAAATTCTAACACCCAATAAGCAAGATGATGGCCCTGCGGAGATGCCAATACCGAGTCCAGGTATCAAATCAGAGGCTTTATCTGAGAGTGAAGTTGCTGGCGCCAGATTGCCCTCAACTCCTCGAGATGACTGCAAACGTGACAATGCAGTGAACGATGAGGGAAAAGATGCGGTGGTTGGGTCCGACAACGGAAAAGAAAGCGGATCAGAGACAAGGGGAGGTGATGTTGAAATGGGCGAAGCCAGCAATGATGCTTAG 4299 0.4071 MSSLVERLRVRSDRKPVYNLDESDDDADFLPGKPGRTEENFERIVRSDANSCQACGESEDLLSCETCTYAFHCKCLLRPLKAPLTDNWRCPECVSPLSDIEKILDCEMRPTVAGDGEASKLGSKQIFVKQYLVKWKGLSYLHCVWVSEKEFLKAFKLNPRLKTKVNNFHRQMASANTSDEDFVAIRPEWTMVDRILACRGHDDEKEYLVKWKELSYDECYWESESDISAFQLEIERFTKLQSRSRRSASSKQKSGGKDGAEEKKKQKEFQHYEQSPIFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARTVIREYEFYFPKKQKKIKKKKSGKIVSESKQDRIKFDVLLTSYEMINFDSASLKPIMWECIIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWLYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAMVDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKEKENKNTVNNSDRANYWEDLLRDRYEEHKTEEFSSLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSGRRPYRKKARADSTEPLPLMEGEGRSFRVLGFNQSQRAQFVQILMRLCSSWLMIVSGLVLWLLCIEEKVLPVNICNSSHFKSLLQFFSLFFSYGFLFLSHIAEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFASEKDPGALLYTDDILLRYPGLKGGKIWKEEHDIVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPVPGQVSTQAQNGANSTNVEALANQPGENGASDMVADGAPGSGDSRNQAQLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTNEAVNGEFKNEPKDSNVPSYKSGEIDKKTIDQLPQLEEIASEEFSAAACDSDPNRSELVRLYNEMCKVADENTTELAGGLADVSLMKNLLPIETVCEGINKILTPNKQDDGPAEMPIPSPGIKSEALSESEVAGARLPSTPRDDCKRDNAVNDEGKDAVVGSDNGKESGSETRGGDVEMGEASNDA 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0664 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 517 IPR027417 -
Lele28g0664 1432 MobiDBLite consensus disorder prediction 251 266 - -
Lele28g0664 1432 ProSitePatterns Zinc finger PHD-type signature. 52 93 IPR019786 -
Lele28g0664 1432 Pfam CHD subfamily II, SANT-like domain 1024 1080 IPR009462 GO:0003677|GO:0006338
Lele28g0664 1432 Pfam CHD subfamily II, SANT-like domain 933 981 IPR009462 GO:0003677|GO:0006338
Lele28g0664 1432 ProSiteProfiles Chromo and chromo shadow domain profile. 98 180 IPR000953 -
Lele28g0664 1432 ProSiteProfiles Zinc finger PHD-type profile. 49 96 IPR019787 -
Lele28g0664 1432 MobiDBLite consensus disorder prediction 903 922 - -
Lele28g0664 1432 CDD CD2_tandem 188 237 - -
Lele28g0664 1432 CDD CD1_tandem 100 170 - -
Lele28g0664 1432 Gene3D - 1057 1199 - -
Lele28g0664 1432 Gene3D - 98 187 - -
Lele28g0664 1432 SUPERFAMILY Chromo domain-like 64 175 IPR016197 -
Lele28g0664 1432 SMART PHD_3 51 94 IPR001965 -
Lele28g0664 1432 SUPERFAMILY Chromo domain-like 178 242 IPR016197 -
Lele28g0664 1432 SMART ultradead3 280 493 IPR014001 -
Lele28g0664 1432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Lele28g0664 1432 Coils Coil 832 859 - -
Lele28g0664 1432 MobiDBLite consensus disorder prediction 1350 1432 - -
Lele28g0664 1432 MobiDBLite consensus disorder prediction 1170 1196 - -
Lele28g0664 1432 Gene3D - 188 239 - -
Lele28g0664 1432 Pfam SNF2-related domain 304 584 IPR000330 GO:0005524|GO:0140658
Lele28g0664 1432 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 46 1279 - -
Lele28g0664 1432 SMART helicmild6 636 720 IPR001650 -
Lele28g0664 1432 MobiDBLite consensus disorder prediction 903 951 - -
Lele28g0664 1432 MobiDBLite consensus disorder prediction 243 266 - -
Lele28g0664 1432 SMART chromo_7 188 242 IPR000953 -
Lele28g0664 1432 SMART chromo_7 97 166 IPR000953 -
Lele28g0664 1432 Pfam CHD subfamily II, DUF1087 841 902 IPR009463 -
Lele28g0664 1432 Gene3D - 276 526 IPR038718 -
Lele28g0664 1432 SMART DUF1087_2 840 905 IPR009463 -
Lele28g0664 1432 MobiDBLite consensus disorder prediction 1386 1400 - -
Lele28g0664 1432 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 482 IPR014001 -
Lele28g0664 1432 ProSiteProfiles Chromo and chromo shadow domain profile. 190 249 IPR000953 -
Lele28g0664 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 775 IPR027417 -
Lele28g0664 1432 CDD SF2_C_SNF 605 731 - -
Lele28g0664 1432 SMART DUF1086_2 910 1091 IPR009462 GO:0003677|GO:0006338
Lele28g0664 1432 Gene3D - 527 751 IPR027417 -
Lele28g0664 1432 Pfam Helicase conserved C-terminal domain 607 720 IPR001650 -
Lele28g0664 1432 Pfam Chromo (CHRromatin Organisation MOdifier) domain 100 154 IPR023780 -
Lele28g0664 1432 Pfam Chromo (CHRromatin Organisation MOdifier) domain 191 239 IPR023780 -
Lele28g0664 1432 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 610 771 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0664 Lele-ChrLele28 4233489 4250174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0664 306 781 RAD5 or RAD16-like Gene Family AT1G02670 23.381 3.87e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele28g0664 SNF2_N 9.1e-67 CL0023