Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0663 ATGACTGTGGAAACCAGAACTGATGAACCCAGAGGACAATTTCCTGTAGGAATGCGTGTTCTTGCTGTTGACGATGACCCAACTTGTCTCTTGGTGTTGGAAACTCTACTTCGGAGATGCCAATATCACGTGACGACGACCAATCAGGCAATAACAGCTTTGAAGATGCTAAGAGAAAACAAAAACATGTTCGACCTGGTTATTAGTGATGTTCATATGCCTGACATGGATGGATTTAAGCTTCTTGAGCTTGTCGGTCTTGAGATGGACCTACCTGTCATAATGTTGTCTGCAAATGGCGACACAAAGCTGGTGATGAAGGGGATTACGCATGGGGCTTGTGACTATCTTCTGAAACCTGTTCGAATTGAAGAGCTAAAGAACATTTGGCAGCATGTGATAAGGAGGAAGAAATTTGACTCAAAGGATAAAAACAGTACTTGTAATCAAGACAAGCCTCATTCTGGCACTGCCAACAATGGATTAGGTTCTGCAGGAGCTGGGAATACTGATCAAAATGGAAAGCTCACCAAGAAAAGGAAGGATCAGGATGATGAAGATGATGACGAACACGAGCATGGCCATGACAATGATGATCCTTCAGCACAGAAGAAGCCTCGTGTTGTTTGGTCTGTTGAGCTCCACAGAAAGTTTGTTGCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTGCCAAAGAAAATTCTGGATTTGATGAATGTTGAGAAACTCACGAGGGAAAACGTGGCAAGCCATCTTCAGGCAATTTTCAAACACTTTCTGAAATATAGGCTGTATCTGAAAAGAATCAGCTGTGTAGCAAACCAACAGGCTAATATGGTGGCAGCCTTGGGTAGTGCAGATGCCTCCTATTTGAGAGTGGGATCTCTGGGTGGGATTAAACATCTTCAGCCATTGAGTGCTTCTGGACAGTTTCAGAACAATGTTTATCGATCCCTCCCTTATAGTGGGATGATTGGAAGACTGAACACTCCAGCTGGTCTTGGTGTTCATGGGTTGCCTTCATCAGGAATTCTTCAGGTGGCTCATGCACAGAATTTAAACAGCAGCAGCAACAACAACTCCATGAATGATCCTCTCAAGTTCCAGTCATCCGTAGCTCATGTCAATCAGAATCAGAATGGTGATTCGCTTCAGGGCATGCCAGTGTCTGTGGGGCTTGACCAATTACAACAGCCTAATAAGGTTGTCAGTTCTGTTCAAGGTCCTACTACTGGTTTTGATGATAAAACAATGTCTCTCATCTCAAACAAGTTGCCTGATCCAAGAGCAAGAGTAAGCTCTAGTTGCTCTAGACCTCCACTCGTGGGCATCGCGACCAATGGCTTCTTGTTAGAACCGAATTCTCAAGACACGCAAGGTGGGAGAGGGTATGAGAATCTTGCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGGTGGATAATCATAATGGAAGGTGTAATGATAATTGGCCAAGTGCTGTGCAGTCATGTGGGATGCCCACTAATTCTTACCCAACAAATGATTGTATTCATGGAGGGAATCCAAGTGGCGCTTCGTCCATCACTTTGCTCTCCACTCGGTCCCGCGAATCATTGGCAGATATGCCATCCCATGGACCCATTTTTACCAATAACACACCAAACGTGGCTTATCAAGGGTGGGATGAACATTCATTAGACTCTCTGGTTCCTGTAAATGTTGCCGCTGGTGCATCAGGATTACACAGAAACTTGAACTATAGTTTCGGCAATCCCTTGGAAATGAAGCATGAGGGGTTCACAAAGTCAGCCGAAGATCCCTCACTGAAACCAAATCAGGGATATATCATAGAACCTAATAAGGCACAGAGGAGTCGCATCTCTAATAATAATCTTGGTTCATTGGAGGACTTGGTCAGTGCAATGATGAAACAGGAGCAAGGCTTCATATGTGATGATTTCACTGGTGGAATATCTATGTGA 1974 0.4407 MTVETRTDEPRGQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTNQAITALKMLRENKNMFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKDKNSTCNQDKPHSGTANNGLGSAGAGNTDQNGKLTKKRKDQDDEDDDEHEHGHDNDDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQAIFKHFLKYRLYLKRISCVANQQANMVAALGSADASYLRVGSLGGIKHLQPLSASGQFQNNVYRSLPYSGMIGRLNTPAGLGVHGLPSSGILQVAHAQNLNSSSNNNSMNDPLKFQSSVAHVNQNQNGDSLQGMPVSVGLDQLQQPNKVVSSVQGPTTGFDDKTMSLISNKLPDPRARVSSSCSRPPLVGIATNGFLLEPNSQDTQGGRGYENLASVASQHSEFSLPLVDNHNGRCNDNWPSAVQSCGMPTNSYPTNDCIHGGNPSGASSITLLSTRSRESLADMPSHGPIFTNNTPNVAYQGWDEHSLDSLVPVNVAAGASGLHRNLNYSFGNPLEMKHEGFTKSAEDPSLKPNQGYIIEPNKAQRSRISNNNLGSLEDLVSAMMKQEQGFICDDFTGGISM 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0663 657 FunFam Two-component response regulator 201 271 - -
Lele28g0663 657 SMART REC_2 18 130 IPR001789 GO:0000160
Lele28g0663 657 MobiDBLite consensus disorder prediction 174 203 - -
Lele28g0663 657 FunFam Two-component response regulator 18 205 - -
Lele28g0663 657 SUPERFAMILY Homeodomain-like 203 259 IPR009057 -
Lele28g0663 657 PIRSF RR_ARR_type-B 1 655 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele28g0663 657 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lele28g0663 657 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lele28g0663 657 MobiDBLite consensus disorder prediction 140 204 - -
Lele28g0663 657 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 365 IPR045279 GO:0009736
Lele28g0663 657 MobiDBLite consensus disorder prediction 150 173 - -
Lele28g0663 657 CDD REC_typeB_ARR-like 20 134 - -
Lele28g0663 657 Gene3D - 201 271 - -
Lele28g0663 657 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 259 IPR006447 GO:0003677
Lele28g0663 657 SUPERFAMILY CheY-like 17 139 IPR011006 -
Lele28g0663 657 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Lele28g0663 657 Gene3D - 18 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0663 Lele-ChrLele28 4228623 4231628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0663 1 423 Response Regulator Gene Family AT2G25180 56.164 8.29e-133 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele28g0663 Response_reg 7.8e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0670 25 4217631 4219347 Lele28g0663 28 4228623 4231628 hybridization
Lele26g0679 26 4318307 4321315 Lele28g0663 28 4228623 4231628 hybridization