Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0646 ATGGGGAAGCCCACCGGTAAGAGGAAGGATCATGTAACACAGAAGACTGCAAATGCGAGCGGCAAGCCGAGTAAGCCCTCTGAGAGGACTTCCAAAGCTTTCGACGAAGACACAGCAATCTTCATCAACATGTCACAGGATCTCAAGGAAGAAGGCAATAGACTCTTTCAGAAAAGGGACCATGAAGGGGCTATGTTGAAGTTTGAAAAGGCCCTCAAGCTCCTTCCCGTAAACCACATAGATGTGGCACACTTGCGTACCAATATGGCCGCGAGTTATATGCAACTCGGTCTTGGAGAGTACCCTCGAGCAATTAATGAATGTAATTTAGCTCTCGAAGTATCGCCCAGATATAGCAAGGCTCTATTGAGAAGAGCAAAGTGCTATGAAGCACTGAATCGATTCGATTATGCGCTCAGAGATGTTAATTTTGTTTTGAGCGTGGAGCCTAATAATCTTAATGCATTGGAGGTTCTCGGGAGTTTGAAAAAGACCATGGAAGAAAAAGGCATAACCATTGATGAGAAAGATTTGGCAAGTTTAGAGCTACCTACCACTGCACCTGTGCGTAAAGTGGCAAGAGAAAAACTAAAGAAAAAGAAAAGTAAAAAAAGTGAGAGCAGGGCGAAGGATAAGGTGATCCTTGAGGATACTACGAATACTGTTAAAGATAAACAGGTGGTGACAACGACAATTGCGAAAAAGGAAGTGATTCTGGAGCCTGTTAAAGAAGAAAAAGTAGTCACAAGGAAGGTGAAGTTGGTATTTGGAGAGGATATAAACTCGGCGCAGTTGCCATTGAATTGTAGCATGAGGTTGGTGAGAGACATAATTAAGGATCGATTTCCCGGATTGAAGGGGGTTATTGTTAAATATAGGGATCAAGAAGGTGATTTGGTTACTATCACTACTACTGATGAATTAAGAGTAGCTGAATCTTCAGGTAATGCCTTGAGTTCTCTTCGACTCTACATTACAGAAGTCAATCCAGAGGAGGAACCAACTTATGATGGAATAACCAATGATGATGAGATGCAAGGTCATGGTATTGAGCATGGGCCAACGGAAGCAGGCAAGGATTTAGCAAGTAAGTTGACTAATCTGGAGGATTGGATAATCCAATTTGCTAGGATGTTCAAGAACCATGTTGGTTTTGATTCTGATTCATATTTGGATATGCATGAGGAGGGAATGAAGCTATATTCGGAAGCCTTGGAGGATGTGGTAACAAGTGACGATGCTCAAGAGCTTTTTGAAATCGCTGCAGATAAATTTCAAGAGATGGCAGCTTTGGCATTATTCAACTGGGGGAATGTTCACATGTCCAGGGCAAGGAGGCGTGCTTCCATTTCAGAGGAAGGGTCAAAGGAATCTGCGCTTGAGCGAATTAAAGTTGCATATGAGTGGGCAAGAAAGGAGTACAAGAAAGCAGAGACGAGATATGAAGAAGCCTTGAAAATCAAACCAGATTTCTATGAGGGATATCTGGCACTTGGCCATCAGCAGTTCGAGCAAGCAAAGCTCTGCTGGTATTATGCAATGGCATGCCAAATGAATTTAGAGGATGGTCCTTCCAGGGAGGTTTTACAACTATATAACAAGGCAGAGGACAGCATGGATAGAGGCATGTTGATGTGGGAGGAGATTGAAGAGCGGCGTTTAAATGGACTATCCAAATTGGATAAGTATAGAGCACATTTGGAAAAAATGGGCTTAGATAGTCTTCTCAAGGATATTTCTTCTGATGAAGCTGCAGAGCAGGCTGCAAATGCGAGGTCACAAATATATATTTTATGGGGCACGATATTGTATGAGCGTTCTGTCGTGGAATATAAGATAGGCTTACCTTCATGGGAGGAATGTTTGGAGGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGGGGTCATGATAAAGAATCATTGTTCCAATCAAACAGCACTAGAAGGTTTGGGGTTCAAAGTCGACGAGATAGTACAGGCGTGGAATGAAATGTATGATGCACAGAGGTGGCAGTTTGGTGTACCATCATTTCGTCTCGAACCATTGTTCCGGCGGCGTGTTCCGAGACTTCATCACATCTTAGAGCATTTTTGA 2112 0.429 MGKPTGKRKDHVTQKTANASGKPSKPSERTSKAFDEDTAIFINMSQDLKEEGNRLFQKRDHEGAMLKFEKALKLLPVNHIDVAHLRTNMAASYMQLGLGEYPRAINECNLALEVSPRYSKALLRRAKCYEALNRFDYALRDVNFVLSVEPNNLNALEVLGSLKKTMEEKGITIDEKDLASLELPTTAPVRKVAREKLKKKKSKKSESRAKDKVILEDTTNTVKDKQVVTTTIAKKEVILEPVKEEKVVTRKVKLVFGEDINSAQLPLNCSMRLVRDIIKDRFPGLKGVIVKYRDQEGDLVTITTTDELRVAESSGNALSSLRLYITEVNPEEEPTYDGITNDDEMQGHGIEHGPTEAGKDLASKLTNLEDWIIQFARMFKNHVGFDSDSYLDMHEEGMKLYSEALEDVVTSDDAQELFEIAADKFQEMAALALFNWGNVHMSRARRRASISEEGSKESALERIKVAYEWARKEYKKAETRYEEALKIKPDFYEGYLALGHQQFEQAKLCWYYAMACQMNLEDGPSREVLQLYNKAEDSMDRGMLMWEEIEERRLNGLSKLDKYRAHLEKMGLDSLLKDISSDEAAEQAANARSQIYILWGTILYERSVVEYKIGLPSWEECLEVAVEKFELAGASPTDIGVMIKNHCSNQTALEGLGFKVDEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRVPRLHHILEHF 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0646 703 Gene3D Tetratricopeptide repeat domain 43 173 IPR011990 GO:0005515
Lele28g0646 703 MobiDBLite consensus disorder prediction 1 33 - -
Lele28g0646 703 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Lele28g0646 703 Pfam PB1 domain 249 326 IPR000270 GO:0005515
Lele28g0646 703 SMART PB1_new 249 328 IPR000270 GO:0005515
Lele28g0646 703 SMART tpr_5 45 78 IPR019734 GO:0005515
Lele28g0646 703 SMART tpr_5 83 118 IPR019734 GO:0005515
Lele28g0646 703 SMART tpr_5 119 152 IPR019734 GO:0005515
Lele28g0646 703 SMART tpr_5 458 491 IPR019734 GO:0005515
Lele28g0646 703 CDD PB1 251 326 - -
Lele28g0646 703 SUPERFAMILY CAD & PB1 domains 247 337 - -
Lele28g0646 703 MobiDBLite consensus disorder prediction 1 15 - -
Lele28g0646 703 Coils Coil 460 487 - -
Lele28g0646 703 SUPERFAMILY TPR-like 389 525 IPR011990 GO:0005515
Lele28g0646 703 SUPERFAMILY TPR-like 34 167 IPR011990 GO:0005515
Lele28g0646 703 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Lele28g0646 703 ProSiteProfiles PB1 domain profile. 249 328 IPR000270 GO:0005515
Lele28g0646 703 Gene3D - 235 328 - -
Lele28g0646 703 PANTHER PROTEIN CLMP1 1 702 IPR044517 -
Lele28g0646 703 Gene3D Tetratricopeptide repeat domain 390 541 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0646 Lele-ChrLele28 4114512 4116709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0646 28 152 Calmodulin-binding Proteins AT3G25230 28.358 1.01e-07 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0649 25 4098684 4100881 Lele28g0646 28 4114512 4116709 hybridization
Lele26g0661 26 4200229 4202426 Lele28g0646 28 4114512 4116709 hybridization