Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0630 ATGGTTAGGATTCTGAAACACTGCGGCGGTTCAGGTTCAGCCCATGGCATAATATGCCCATTCGCGTCATCACGTGGACTTCACATGCTCTCTGGACCATCTCTCTTGTGCTCTATAGGCTACATGGAGCTTCAGTTAGGTCTGGCTCTCCCGGCTCAGAATCCCATGCAAGGATTCAACCTAACCAGCCATGGCTTGGAGGGTTTAGAGTTAAGGAGGTCCAGTTTCTGTATTGAAAGCCACAGGCATGTAAAAAACAAGCGTAGGTTTGAAGAGTCATTTGGACATTCTTCGAAAACTCTGCCTTTACTGGTATGGAACGGACAGCCAAACGAGGAAGATGACGGTGGTGGGAAGAGGAACAGAAACACTCATCCGGAAAACGAGAATAACGAAGAAGAAAACCGTTTAGTGGGATGGCCACCTATTAAATCATGGAGGAAGAAGAAAATCCATCAGCACCCAAGAGTCCCGATCAGGAACGATAGGATGCTAGCTGAGAATGGAAATAGAGGATCAAACTCTTTATTTGTTAAGGTTAAGATGGAAGGAGTAGCTATAGGACGGAAGATCGATTTGAGGCTTTACATCTCGTACGAGACTCTTACACATAAGTTAATTAGTATGTTTCATAAATACCATAAGCTTGATGAAGATAAGGCAAGTTATACACTTATGTATCAGGACGAAGAAGGGGACTGGCTGGTTGCTGGAGGAGATGTTCCCTGGCAATCCTTCATTCACTCCGCGAAACGCTTGGAGATAGTAAGGAGTGGCGTTGAAGAATCCACAAACAGCAGATAG 804 0.4515 MVRILKHCGGSGSAHGIICPFASSRGLHMLSGPSLLCSIGYMELQLGLALPAQNPMQGFNLTSHGLEGLELRRSSFCIESHRHVKNKRRFEESFGHSSKTLPLLVWNGQPNEEDDGGGKRNRNTHPENENNEEENRLVGWPPIKSWRKKKIHQHPRVPIRNDRMLAENGNRGSNSLFVKVKMEGVAIGRKIDLRLYISYETLTHKLISMFHKYHKLDEDKASYTLMYQDEEGDWLVAGGDVPWQSFIHSAKRLEIVRSGVEESTNSR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0630 267 ProSiteProfiles PB1 domain profile. 175 263 IPR000270 GO:0005515
Lele28g0630 267 Gene3D - 170 266 - -
Lele28g0630 267 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 43 258 IPR003311 GO:0005634|GO:0006355
Lele28g0630 267 MobiDBLite consensus disorder prediction 105 136 - -
Lele28g0630 267 MobiDBLite consensus disorder prediction 113 134 - -
Lele28g0630 267 SUPERFAMILY CAD & PB1 domains 171 255 - -
Lele28g0630 267 Pfam AUX/IAA family 221 258 IPR033389 -
Lele28g0630 267 Pfam AUX/IAA family 79 214 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0630 Lele-ChrLele28 4016525 4019003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0630 158 258 B3 DNA Binding Superfamily AT3G61830 37.255 1.18e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele28g0630 AUX_IAA 5.5e-24 CL0072