Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0619 ATGAAAGTGAAGCAGGTGAAACTTTTATTGCACATTCACTGTTTCAATTCCCCTCTTTCCAACCCATCCACCGACAATTTATACACGCTCATATCATCTAAAAGCCTCACCACTTTGCCTTATTTGATGACATTGTTGATTGTACCCTCCACTCTCCATTTATTCCCCTTTTGCTTCTTTCTCTGCTCCCTAGCTTCCTTCCTCTCTCTCTCCCCCCTCCCTCAACAGGATATGGCAAAAGCAAACAAGTTCAGAGGCGTGAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCATCCATTACTGAAAAGACGTGTGTGGCTGGGGACTTTTGAGACGGCCGAGGCGGCTGCTAGGGCATACGACCAAGCTGCCATATTGATGAATGGTCAAAATGCGAAGACGAACTTCCCGACTTCAGTGTATCAGCCCCAAGACAACACTACTGCTTCTTTATCTCCCAAGGCTCTTTCGGACCTTCTCAGCACGAAGCTCAGAAAGTGTTGCAAAGCTCCGTCTCCTTCGCTCACCTGTCTCAGGCTTGACACTGATAATTCTCACATTGGTGTGTGGCAGAAGGGAGCAGGACCACATTCTGACTCTAAGTGGGTCGTCAGGGTGGAGCTCGGCAACAAGGATCATCAGCCCAAGGACGAGTCCGATTCTTCGTCGTCGGTGAGGTCATCGGTGCCGGAGACTGGTGCACAAGCAGAAAATCTGATGGGGGATGAAGAAGACATGCTTGCAATGCAGATGATTGAAGATCTTCTTAACTGGAACTATCCTTGCTCTCCGAGTGCTTCTCATCAGGAATAG 822 0.4939 MKVKQVKLLLHIHCFNSPLSNPSTDNLYTLISSKSLTTLPYLMTLLIVPSTLHLFPFCFFLCSLASFLSLSPLPQQDMAKANKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSVYQPQDNTTASLSPKALSDLLSTKLRKCCKAPSPSLTCLRLDTDNSHIGVWQKGAGPHSDSKWVVRVELGNKDHQPKDESDSSSSVRSSVPETGAQAENLMGDEEDMLAMQMIEDLLNWNYPCSPSASHQE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0619 273 CDD AP2 83 142 IPR001471 GO:0003700|GO:0006355
Lele28g0619 273 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Lele28g0619 273 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Lele28g0619 273 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 81 223 - -
Lele28g0619 273 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Lele28g0619 273 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Lele28g0619 273 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Lele28g0619 273 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Lele28g0619 273 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Lele28g0619 273 MobiDBLite consensus disorder prediction 214 244 - -
Lele28g0619 273 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0619 Lele-ChrLele28 3956657 3957579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0619 78 271 AP2-EREBP Transcription Factor Family AT5G25390 56.566 1.43e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele28g0619 AP2 2.8e-12 CL0081