Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0615 ATGTGTGTGATTATGAACAGCTTCTCAGGCAGCTCGGAATCTTTTACTCTCGCAGAACCAATGGGAGAAACTAAGGACGAAGGATATGAGGAAGAGCTTCTCGACTACGAAGAGGAAGAAGACAAGGCGCCCGATTCCGTTGGGACTAAAGCCAACGGTGAAGCGGCCAAAAAGGGATATGTCGGTATACACAGTTCGGGATTCAGAGACTTCCTTTTGAAGCCAGAACTCCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCGTCTGAAGTTCAACACGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTATTATGTCAAGCTAAATCTGGAATGGGGAAAACTGCTGTCTTTGTGCTTTCAACTTTGCAACAAATTGATCCTGTTGCTGGCCAAGTTTCTGCCCTTGTTTTGTGTCACACAAGGGAACTGGCTTATCAGATATGTCACGAGTTTGAGAGGTTCAGCACCTACCTGCCTGATCTCAAGGTTGCTGTTTTTTATGGAGGTGTCAACATTAAAGTTCACAAGGATCTCTTAAAAAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATACTAGCATTGACCCGGGATAAGGACCTTTCTTTAAAGAATGTTAGGCATTTCATTTTGGATGAATGTGACAAGATGCTGGAATCATTAGACATGAGGAGGGACGTGCAAGAAATTTTCAAGATGACTCCTCATGATAAGCAAGTCATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAGGATCCTATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGACTAGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGTAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTAGTCATCTTCGTAAAAAGTGTGAGTAGAGCTGCTGAACTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAGGAAAGGTTAAAGCGATATAAGGGTTTCAAAGAGGGGCATACTCGGATTCTTGTAGCAACAGATCTGGTTGGAAGAGGCATTGACATTGAACGTGTCAACATAGTCATAAACTATGACATGCCGGATTCTGCTGACACATACTTGCACAGGGTTGGCCGAGCAGGAAGGTTTGGCACCAAGGGCCTTGCAATTACATTTGTTTCGTGTGCTGCAGATGTTGACGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGATATAAAACAGCTTCCAGAGCAGATCGATACATCTACATATATGCCATCATAG 1344 0.4338 MCVIMNSFSGSSESFTLAEPMGETKDEGYEEELLDYEEEEDKAPDSVGTKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0615 447 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Lele28g0615 447 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 64 421 - -
Lele28g0615 447 FunFam DEAD-box ATP-dependent RNA helicase 56-like 54 272 - -
Lele28g0615 447 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 443 IPR001650 -
Lele28g0615 447 Gene3D - 279 446 IPR027417 -
Lele28g0615 447 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 270 IPR014001 -
Lele28g0615 447 Pfam Helicase conserved C-terminal domain 296 403 IPR001650 -
Lele28g0615 447 SMART helicmild6 322 403 IPR001650 -
Lele28g0615 447 Pfam DEAD/DEAH box helicase 91 256 IPR011545 GO:0003676|GO:0005524
Lele28g0615 447 CDD SF2_C_DEAD 283 412 - -
Lele28g0615 447 Gene3D - 62 278 IPR027417 -
Lele28g0615 447 CDD DEADc_DDX39 65 272 - -
Lele28g0615 447 SMART ultradead3 85 286 IPR014001 -
Lele28g0615 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 414 IPR027417 -
Lele28g0615 447 FunFam DEAD-box ATP-dependent RNA helicase 279 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0615 Lele-ChrLele28 3943292 3949197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0615 21 447 Eukaryotic Initiation Factors Gene Family AT5G11200 83.156 0.0 757