Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0601 ATGGGAGTTATCAAGGCTCTCCATTGTCCATTTGCTTGCATTGCATGAGAGGGCAGGGTGAGTGACGGCGACGGTGCTTCCTTGCCGTTGCTTACAATGCCGGCGGTGCGTCAAAAAATGAAGAATCTTTTTGCCCATTCAATCTTTTGCAGCAGAGGAGACGAGCAAGAGATTGAGCTTGAGCACATGTCCAGGGACGAGGGCAGCCATTACAGCCTCGTCGGAGCCCCTCTTCCTTCTCTTGGCGCCAGTGCCGCCAGCACCAATCGCCGACCCAAGCTCCGATCCTTCATCATCTCTCCTTTCAACCCTCGTTACAGATGCTGGGAAACATTTCTGGTCCTTTTAGTTTTCTACACTGCATGGGTTTGCCCCTTTGAATTTGGATTCCTAAATGAATCTAAGGGTCCTCTTGCTATAGCAGATAATGTTGTCAACGGCTTTTTTGCCATTGACATTGTTCTGACGTTCTTTGTTGCCTACCTCGACAAGAGTTCTTATCTGTTTATAGACAAACCGAAGCTGATTGCATCGAGATATGCCAAAACCTGGCTGTTCTTTGATGTCATCTCTACCATCCCTTTTGAACTTACTCGTAAAGTACTGCCCAACTCTCTTCAGACATATGGGCTCTTTAACATGCTGCGCCTTTGGCGTCTCCGTAGAGTCAGTGCTTTGTTTGCAAGATTAGAAAAGGACAGGAATTTTAACTACATCTGGGTCCGCTGTTCAAAGCTGATATGTGTTGTAATGTTTACAGTGCATTTTGCCGCCTGCTTTATGTATTTTCTGGCTGCAAATCATGACATAAAAACCACATGGTTTAGCCTAGTTGCTAACGGAGACCAGTTTCATCTGTGGGGACACTATGTAACATCAGTATACTGGGCCTTGGTTACTATGTCCACGGTTGGTTATGGTGATTTGCATCCCGTAAATACAAAGGAGATGACGTTTGACATTTTCTACATATTCTACATCCTTGGACTTAACTCATATCTTATAGGAAATATGACCAATATGGTTGTCCATCTCACAAGTCGAACGAGGAAATATAGAGACACTGTTCAAGCCGCCTCAGGTTTTGCACAACGGAACCAGTTGCCTGTCCGCTTGCAAGAGCAGATGCTTGCTCATTTGTTTATGAGGTACAGAACAGATTTAGAAGGACTTCATCATCAAGAGGTTATTGATTCTCTTCCAAAAGCGATTCGATCCAGCATATCACACCACCTCTTCTATTCACTTGTTGACAAAGTCTACTTATTTCATGGCGTCTCCAATGACCTACTTTTTCAACTGGTCGCGGAAATGAATGCTGAGTACTTTCCTCCAAAGGAAGATGTGATTTTACAGAATGAAGCACCAACAGACTTTTATATATTGGTTACGGGCGCAGCTGTTGTTGGTGAGGCAAAGGTAGGAGATGTAGTTGGAGAGATAGGCGTGCTATGTTACAGGCCACAGCTCTTCACAGTTCGAACCAAACGATTGAGCCAGCTTTTACGTCTGAATCGCACTGCATTTATAAATCTTGCTCATTCAAATGTTGGAGATGGGACAATAATCATGAGTAATTTCCTTCAGCATCTGAAGGAATCGAGTGATCCAATGATGGAGGGGGTTTTGGCAGAAACGGAGAACATGCTTGCACGGGGCAGAATGGATTTGCCTATCAGTCCATGCTTTGCTGCGAACAGAGACGATGATCTATTGTTGCATCAGTTGCTGAAGAGGGGCTCAGATCCAAATGAAACAGATAAAAATGGAAGGACGTCACTGCATATTGCCGCATCCAGGGGCAACGAACATTGTGTGGTTCTACTTATTGAATATGGAGCCGATCCTAACAAAAAAGATTTAAATGGAAGTATCCCACTGTGGGAAGCAATGTTGGGAGGGCATGAATCGGTGATAAAGCTTCTGATGGACAATGGTGGAGACCTATCCTGTGCGGACGTAGGGCATCTGGCATGCTCTGCAGTGGAGCAAAACAACTTGGAATTGCTCAAAGAAATTGTAGGATATGGCGGCGATGTGACGCAGCCCAAAAGCAATGGCACAACGGCACTTCACACGGCAGTATGCGATGGAAACACTGAGATTGTAAAGTTCCTTGTACACCAAGGAGCAGATATTGATAAACCAGACGTTCATGGATGGACTCCTCGGGCTCTGGCAGATCATCAAGGCCATGAAGATATCGTAGAGATGTTCCGCATCATCCGGGAGGGCAAAACACCCCTTGTTACTCCCTCCACGATGAATTATTCCAAGTGCCCCGGTAAGTTTCGCAGTGAACCAACGACGCGTGCCCCTCAAGACGTGACTTGGTTGCAGAATAATCCAAGGCGAAGAGCCAATCATTTTCACAATTCTTTCTTTGCGATCATGTCGGCTGCTGCTAACCGTGATCAAGCCCATGCATCTTCGCAAGACAACGATAATGTTGCAGAGAACCGGAATGGATTCGCAGCGAGAGTAGTTGTGAGTTGTCCAGAAAAAGGGGAACATGGTGGGAAGCTCGTGTTTCTGCCCAAGTCCCTTGAAGAACTGATAGACATAGGGGTGAAAAAGTTTGACTTTTTGGCCAACAAAATTCTGACTAGAGAAGGAGCTGAGATTGAGGATATAAAGCTTATAAGAGATGGAGATCATCTCATTCTTGCACGTGATAGAGCTCTTGAGCCCGATGAAGAAGGCAGGTAG 2709 0.4548 MGVIKALHCPFACIAXEGRVSDGDGASLPLLTMPAVRQKMKNLFAHSIFCSRGDEQEIELEHMSRDEGSHYSLVGAPLPSLGASAASTNRRPKLRSFIISPFNPRYRCWETFLVLLVFYTAWVCPFEFGFLNESKGPLAIADNVVNGFFAIDIVLTFFVAYLDKSSYLFIDKPKLIASRYAKTWLFFDVISTIPFELTRKVLPNSLQTYGLFNMLRLWRLRRVSALFARLEKDRNFNYIWVRCSKLICVVMFTVHFAACFMYFLAANHDIKTTWFSLVANGDQFHLWGHYVTSVYWALVTMSTVGYGDLHPVNTKEMTFDIFYIFYILGLNSYLIGNMTNMVVHLTSRTRKYRDTVQAASGFAQRNQLPVRLQEQMLAHLFMRYRTDLEGLHHQEVIDSLPKAIRSSISHHLFYSLVDKVYLFHGVSNDLLFQLVAEMNAEYFPPKEDVILQNEAPTDFYILVTGAAVVGEAKVGDVVGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFINLAHSNVGDGTIIMSNFLQHLKESSDPMMEGVLAETENMLARGRMDLPISPCFAANRDDDLLLHQLLKRGSDPNETDKNGRTSLHIAASRGNEHCVVLLIEYGADPNKKDLNGSIPLWEAMLGGHESVIKLLMDNGGDLSCADVGHLACSAVEQNNLELLKEIVGYGGDVTQPKSNGTTALHTAVCDGNTEIVKFLVHQGADIDKPDVHGWTPRALADHQGHEDIVEMFRIIREGKTPLVTPSTMNYSKCPGKFRSEPTTRAPQDVTWLQNNPRRRANHFHNSFFAIMSAAANRDQAHASSQDNDNVAENRNGFAARVVVSCPEKGEHGGKLVFLPKSLEELIDIGVKKFDFLANKILTREGAEIEDIKLIRDGDHLILARDRALEPDEEGR 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0601 902 ProSiteProfiles Ankyrin repeat region circular profile. 622 653 - -
Lele28g0601 902 Gene3D - 108 344 - -
Lele28g0601 902 Pfam Ankyrin repeats (3 copies) 564 650 IPR002110 GO:0005515
Lele28g0601 902 Pfam Ankyrin repeats (3 copies) 658 739 IPR002110 GO:0005515
Lele28g0601 902 PANTHER POTASSIUM CHANNEL AKT1 68 892 IPR045319 GO:0005249|GO:0006813
Lele28g0601 902 ProSiteProfiles Ankyrin repeat profile. 589 621 IPR002110 GO:0005515
Lele28g0601 902 Pfam KHA, dimerisation domain of potassium ion channel 827 889 IPR021789 -
Lele28g0601 902 SMART ANK_2a 653 682 IPR002110 GO:0005515
Lele28g0601 902 SMART ANK_2a 622 651 IPR002110 GO:0005515
Lele28g0601 902 SMART ANK_2a 686 715 IPR002110 GO:0005515
Lele28g0601 902 SMART ANK_2a 589 618 IPR002110 GO:0005515
Lele28g0601 902 SUPERFAMILY Ankyrin repeat 563 739 IPR036770 -
Lele28g0601 902 ProSiteProfiles cAMP/cGMP binding motif profile. 422 530 IPR000595 -
Lele28g0601 902 ProSiteProfiles Ankyrin repeat region circular profile. 589 620 - -
Lele28g0601 902 Gene3D Jelly Rolls 388 537 IPR014710 -
Lele28g0601 902 FunFam Potassium channel KAT3 108 344 - -
Lele28g0601 902 Gene3D - 559 741 IPR036770 -
Lele28g0601 902 ProSiteProfiles KHA domain profile. 827 902 IPR021789 -
Lele28g0601 902 Pfam Ion transport protein 107 349 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele28g0601 902 FunFam Potassium channel KAT2 410 535 - -
Lele28g0601 902 SUPERFAMILY Voltage-gated potassium channels 101 343 - -
Lele28g0601 902 CDD CAP_ED 422 516 IPR000595 -
Lele28g0601 902 PRINTS Ankyrin repeat signature 702 716 IPR002110 GO:0005515
Lele28g0601 902 PRINTS Ankyrin repeat signature 590 605 IPR002110 GO:0005515
Lele28g0601 902 ProSiteProfiles Ankyrin repeat profile. 622 654 IPR002110 GO:0005515
Lele28g0601 902 SUPERFAMILY cAMP-binding domain-like 347 531 IPR018490 -
Lele28g0601 902 ProSiteProfiles Ankyrin repeat region circular profile. 686 717 - -
Lele28g0601 902 SMART cnmp_10 422 528 IPR000595 -
Lele28g0601 902 PRINTS EAG/ELK/ERG potassium channel family signature 153 162 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele28g0601 902 PRINTS EAG/ELK/ERG potassium channel family signature 142 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele28g0601 902 PRINTS EAG/ELK/ERG potassium channel family signature 290 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele28g0601 902 PRINTS EAG/ELK/ERG potassium channel family signature 119 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele28g0601 902 PRINTS EAG/ELK/ERG potassium channel family signature 334 343 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele28g0601 902 ProSiteProfiles Ankyrin repeat profile. 686 718 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0601 Lele-ChrLele28 3854795 3862432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0601 54 891 Ion Channels AT4G32500 60.995 0.0 1041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0601 28 3854795 3862432 Lele02g0608 02 3640864 3646103 CCT
Lele28g0601 28 3854795 3862432 Lele04g0625 04 3781717 3785017 CCT
Lele25g0603 25 3829155 3833693 Lele28g0601 28 3854795 3862432 hybridization
Lele26g0617 26 3934824 3938663 Lele28g0601 28 3854795 3862432 hybridization