Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0595 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTCGCTATTGATGCTCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAGCAACAGCAGCCACAACCTCAGCAGTCACAGCAGCAGCAACAACAGCAACACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAGCAGCAGCAACAACAACAACAGCAGCAACAGCAGCAGCAACATCAGCAACAGCAACAACAGCAGCACCAGCAACAGCAGCCACCGCCACAACAGCAGCCACCGCCACAACAGCAGAGAAGGGATGGGCCTCATCTCTTAAATGGAGGTACAAATGGGATAGTTGAGAACCCACTGATGCGGCAAAACCCTGGTACTGTGAATGCACTGGCCACAAAGATGTATGAGGAAAGGTTAAAACCGCCTCTTCAGAGGGATTCCTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCTCCATATTGAAGTCAGCTGCAGCTTCTGGCCAACCTTCAGGGCAAGTGTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACTCTCAAGGGGTGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCACAAAAGGCTTTTATGCAAGGCCCTCAGCCCTTTCATCAACTTCAAATGTTGTCGCCACAACATCTTATGCTTGCTCAACAAAATCTTGCATCACCATCTGCCAGTGATGAAAATAGACGACTTAGAATGCTTTTGAATAATAGGAATATGGGCCTAAGTAAGGATGGTCTTTCAAACCCCATGGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGCCCTCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACATCAGCAGCATCAACAACAGAATACCAATCCACAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAGTTTTAACATGCATCAGCAAGATAAAGTGGGGGGTATTAGTAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTTAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCCGGTCCTGCCAATAGCTCAGGAACAGCAAATACAACTGGCCCGTCTCCAAGTTCAGCACCCTCAACCCCTTCGACTCATACTCCTGGAGATGTGATATCGATGCCTGCTGTGCCTCATAATGGTAGTTCTTCAAAGCCTCCTATGATATTTGGCACTGACGGCACTGGAACTCTTACATCACCTTCAAATCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGATTCGTTGATGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGCATGGATATAAGCAAAGGCTTCTCATTTGCCGAAGTCAATTCTGTACGAGCTAGTTCAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCCAAAAGCTACTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTTAGTCCAAGCATGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACGCTTCGCACCTTCACAGGACATTCTGCGTCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTTATCTGCTCTTGTGACGGTGATGGCGAAATACGATATTGGAGTATAAATAATGGCAGCTGTGCTAGAATCTCTAAGGGTGGCACTGCCCAGATGAGGTTTCAACCTCGCATAGGGAGGTACCTTGCCGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAAACACAAAAATGCCAATATTCATTACAGGGGCATACAAAGCCAATACATTCTGTTTGCTGGAACCCTTCTGGGGAGTCGCTTGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCTGGGAGTGAAGGGGAATGTGTCCATGAGCTCAGCTGTAATGGGAATAAATTTCATTCTTGCGTTTTCCATCCGACATATTTTTCGTTGCTGGTCGTTGGTTGTTACCAGTCTCTGGAGCTTTGGAACATGGCGGAGAACAAGACGATGACTCTATCAGCTCACGAAGGACTAATTGCTTCTTTGTCAGTCTCAAATGTAACTGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2712 0.4554 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQQPQPQQSQQQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQQHQQQQQQQHQQQQPPPQQQPPPQQQRRDGPHLLNGGTNGIVENPLMRQNPGTVNALATKMYEERLKPPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSAAASGQPSGQVLHGVGGGMSQQVQARSPQLPGSAPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKAFMQGPQPFHQLQMLSPQHLMLAQQNLASPSASDENRRLRMLLNNRNMGLSKDGLSNPMGDVVSNVGSPLQAGSPLLPRGDTDMLMKLKLAQLHQQHQQQNTNPQQQQLQQHALSNQQSQTSSFNMHQQDKVGGISSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPPMIFGTDGTGTLTSPSNQLWDDKDLELQADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRCMDISKGFSFAEVNSVRASSSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKPKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARISKGGTAQMRFQPRIGRYLAAAAENVVSILDVETQKCQYSLQGHTKPIHSVCWNPSGESLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYFSLLVVGCYQSLELWNMAENKTMTLSAHEGLIASLSVSNVTGLVASASHDKFVKLWK 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0595 903 Coils Coil 111 141 - -
Lele28g0595 903 ProSitePatterns Trp-Asp (WD) repeats signature. 680 694 IPR019775 -
Lele28g0595 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 696 - -
Lele28g0595 903 FunFam Transcriptional corepressor LEUNIG 750 903 - -
Lele28g0595 903 Pfam LisH 10 36 IPR006594 GO:0005515
Lele28g0595 903 CDD WD40 615 903 - -
Lele28g0595 903 Gene3D - 752 903 IPR015943 GO:0005515
Lele28g0595 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 704 742 - -
Lele28g0595 903 MobiDBLite consensus disorder prediction 88 147 - -
Lele28g0595 903 MobiDBLite consensus disorder prediction 419 543 - -
Lele28g0595 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 871 903 IPR001680 GO:0005515
Lele28g0595 903 MobiDBLite consensus disorder prediction 88 181 - -
Lele28g0595 903 Gene3D - 595 751 IPR015943 GO:0005515
Lele28g0595 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 696 IPR001680 GO:0005515
Lele28g0595 903 SMART Lish 8 40 IPR006594 GO:0005515
Lele28g0595 903 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 903 - -
Lele28g0595 903 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lele28g0595 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 619 650 IPR001680 GO:0005515
Lele28g0595 903 FunFam Transcriptional corepressor LEUNIG 598 749 - -
Lele28g0595 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 871 903 - -
Lele28g0595 903 SMART WD40_4 864 903 IPR001680 GO:0005515
Lele28g0595 903 SMART WD40_4 823 862 IPR001680 GO:0005515
Lele28g0595 903 SMART WD40_4 697 737 IPR001680 GO:0005515
Lele28g0595 903 SMART WD40_4 654 693 IPR001680 GO:0005515
Lele28g0595 903 SMART WD40_4 779 817 IPR001680 GO:0005515
Lele28g0595 903 SMART WD40_4 612 651 IPR001680 GO:0005515
Lele28g0595 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 826 IPR001680 GO:0005515
Lele28g0595 903 MobiDBLite consensus disorder prediction 419 525 - -
Lele28g0595 903 Pfam WD domain, G-beta repeat 781 816 IPR001680 GO:0005515
Lele28g0595 903 Pfam WD domain, G-beta repeat 700 737 IPR001680 GO:0005515
Lele28g0595 903 Pfam WD domain, G-beta repeat 656 693 IPR001680 GO:0005515
Lele28g0595 903 Pfam WD domain, G-beta repeat 619 650 IPR001680 GO:0005515
Lele28g0595 903 Pfam WD domain, G-beta repeat 866 903 IPR001680 GO:0005515
Lele28g0595 903 SUPERFAMILY WD40 repeat-like 614 903 IPR036322 GO:0005515
Lele28g0595 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 704 746 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0595 Lele-ChrLele28 3802471 3809445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0595 698 902 Miscellaneous Gene Families AT5G08390 26.190 3.61e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele28g0595 WD40 0.089 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0594 25 3774568 3781852 Lele28g0595 28 3802471 3809445 hybridization
Lele26g0608 26 3879238 3889134 Lele28g0595 28 3802471 3809445 hybridization