Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0591 ATGGCCATGCTGAGAATGGCGCAGCATAACAATGGCAATCACAGTTCTAATCAACAGTCAATGAAGCCAGTCTTTCATGACTTTATGGGCATGAAGCCCACTGATTCGCCCCTCGTTGCGGCCCATAAAACAGCTGATGCCAGGCCGTCGGAGGCGTCGCCATCGTCGGCATCGGTCTCTGTTGGCGCCTCTTCCGGTGTTGCCCGTGGCCCCCTCTCAACCACATCTGATATCGCTTCTGAAAGACAGTTAGGAAATCACCTCGAGGGAGTCCCATTCTATTGCCCGAGGAGTGATCTTTCTGGCACTGAGATTAGTAACAGAATGGTAGGAAACAAGAGAAGTAATTCTGATTTTATGAGTTCCTCCAGAGATGCATTCCAAATGGTGCCTGACTCTCTTCAAAATTTGCATTTAATGAAGACCCTCCAGAATGCCGCTGGAGGAGAGCAGCATAGAAGGTCTAATGATGATAATGTGTTTCTTGGTATGCAGTCAAGGAAGCCAACTTCTGCTTCTCACATATATCAGCCTTCCACGGGCACCAAGACTGATGTCAATAAATGGGAGCGATCTATTCTCATGAATACTGGCCCTTCCATGCAGCATCCACCAGGTGGGGGTCAATTAGCATCTTTCGTGCACCAGATACCTTCTAACAAGAGCAGGGATGCTAATGCTGGTCCTTCATTTATTTCTCAATCCGCTGCTGATGAAGGATCTAGAACAGGAATCAAGGGCCCTGGGATCTTGAGTTCCATGAACACTACCACTGCTGCTTATGAGAAATCTCTGTCTGCACTTGGCGGAAACAGGCCAAAGCCATTAACTGGCATAATTGACCCAGAATCTTCCATGCCTCCAAGTCAACAAGGGTTAGCATCTGCCAGCTGCCAGATGACTATTTTTTATGGAGGTCAAGCTCACGTTTTTGATAATGTCCACCCCAATAAGGCAGAAATTATAATGGCTTTAGCTGGGTCAAATGGTGGATGTTGGTCCACGACATACTCCCCAAAACCTGCTGTGAAGCTCACAAATGACAGTAACATACTGTGTGGAGATAGTGAGACTGGTATAGTGAGTAAGATTAAACCCCCGCAGGAGCCTCATGGCAGATTATCTTTCGCAGGCACTTCGAGTCTTGCCGTAAGATCTGGAAATCGGTGGCATAATCAAGCAGGGGCGCATCAGGGAAGCATCGTAGCCAATGAAGATGTTAGGAATTCAATTAAAGCCTCAGATCCCACTTCTGAGGACAAAAGGACGCAATCCAATTGA 1281 0.4731 MAMLRMAQHNNGNHSSNQQSMKPVFHDFMGMKPTDSPLVAAHKTADARPSEASPSSASVSVGASSGVARGPLSTTSDIASERQLGNHLEGVPFYCPRSDLSGTEISNRMVGNKRSNSDFMSSSRDAFQMVPDSLQNLHLMKTLQNAAGGEQHRRSNDDNVFLGMQSRKPTSASHIYQPSTGTKTDVNKWERSILMNTGPSMQHPPGGGQLASFVHQIPSNKSRDANAGPSFISQSAADEGSRTGIKGPGILSSMNTTTAAYEKSLSALGGNRPKPLTGIIDPESSMPPSQQGLASASCQMTIFYGGQAHVFDNVHPNKAEIIMALAGSNGGCWSTTYSPKPAVKLTNDSNILCGDSETGIVSKIKPPQEPHGRLSFAGTSSLAVRSGNRWHNQAGAHQGSIVANEDVRNSIKASDPTSEDKRTQSN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0591 426 MobiDBLite consensus disorder prediction 387 426 - -
Lele28g0591 426 MobiDBLite consensus disorder prediction 41 69 - -
Lele28g0591 426 ProSiteProfiles Tify domain profile. 293 328 IPR010399 -
Lele28g0591 426 Pfam tify domain 295 327 IPR010399 -
Lele28g0591 426 MobiDBLite consensus disorder prediction 412 426 - -
Lele28g0591 426 MobiDBLite consensus disorder prediction 1 21 - -
Lele28g0591 426 MobiDBLite consensus disorder prediction 49 69 - -
Lele28g0591 426 SMART tify_2 293 328 IPR010399 -
Lele28g0591 426 MobiDBLite consensus disorder prediction 387 411 - -
Lele28g0591 426 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 216 366 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0591 Lele-ChrLele28 3777548 3781128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0591 6 385 Tify Gene Family AT4G32570 39.196 2.88e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele28g0591 tify 4.8e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0589 25 3749351 3752820 Lele28g0591 28 3777548 3781128 hybridization
Lele26g0604 26 3850684 3854213 Lele28g0591 28 3777548 3781128 hybridization