Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0587 ATGGACGTTCTCTCACCAGAACTATATCTTGAAGGTCCATCCGACACTTGCCCATTGCTGATGGAGCAGACAGGGCACTTGAACAGTAGTCAGCACGTCATTGACATCTCTGGGAGTATTGATGCTTCAACATCAACTTCACCTCATGATAGATATATTAGTAACATAGATACATCCGAACATGGAGAAGACCCTACAAGTGCAGGATTCCCTGTTTCTCAGCAATCAGTTCCTCTTTCTAGTGTATCCAATGGATCGAATTCTAGGAATTCTTCATCAACGAGACAGGAGGAATCCCGCCGACTCAGGAATCCATTGAATTCTGGCTTTTGGATATCAATTGAGCTATTCCTCACTGTAAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCAACGCATGAGCATCCAAGCACTCCATTGTTAGCATGGATCATCGGTTATGCCAGTGGTTATGTTGCTCTCCTTCCTCTGCTCTATTGGCGGTATTACTTTTGTAACCAGATTCAAGAGCAAGATTCCTCTCATCTGGGTGAGACTTCTCAGATGAATGTTTCTTCAAGGACCTATCATTCTGTTGCTAGAACCAGTGGACAAGAGGATGATCAGGCTACTGCTGCATCATCCGTAAGCAATCAAGGTTCATGGTTGATGAATACAAGACTGAAGAAACTAATGGAATACTTCAAAATGGCCTTAGATTGCTATTTTGCCGTGTGGTTTGTTGTTGGCATTGTCTGGATCTTTGGGGCACAATCGTCTGCTGATGCAGCTCCTAACTTGTATAGGTTAACTATAGTGTTTCTCATCTTTAGCTGTATTGGATATGCTATGCCCTTCCTTGTATGTGCGACAATATGTTGTTGTCTGCCTTGCATAATTTCCATTGTTGGGTTTAGAGAAGATCAGATACAAACCAGAGGGGCAACCACTGAATCCATTAATGCCTTGCCAACATACAAATTTAAAATGAAAAGTAAAATCAATTCTAGCAACTCTGATATTGGTGAAGGTGGAATTGTTGCTGCAGGAACTGAAAAGGAGCGTCTTATCTCTGGAGAGGATGCGGCTTGCTGCATCTGCCTGACAATGTACGAAGACAACGATGAGTTAAGAGAATTGGCTTGTTCTCATCTTTTTCACAAAGACTGTGTAGATAAGTGGTTGAAGATAAATGCATCATGCCCTCTTTGCAAGGGTGAGGTTGGAGAGGTTGAGAACGCTAGAGGATCATCGGGGTCCGTACAAGATGCAGGTCAGCAAGTTCAAAATATATAG 1281 0.4239 MDVLSPELYLEGPSDTCPLLMEQTGHLNSSQHVIDISGSIDASTSTSPHDRYISNIDTSEHGEDPTSAGFPVSQQSVPLSSVSNGSNSRNSSSTRQEESRRLRNPLNSGFWISIELFLTVSQIVASIIVLSLSTHEHPSTPLLAWIIGYASGYVALLPLLYWRYYFCNQIQEQDSSHLGETSQMNVSSRTYHSVARTSGQEDDQATAASSVSNQGSWLMNTRLKKLMEYFKMALDCYFAVWFVVGIVWIFGAQSSADAAPNLYRLTIVFLIFSCIGYAMPFLVCATICCCLPCIISIVGFREDQIQTRGATTESINALPTYKFKMKSKINSSNSDIGEGGIVAAGTEKERLISGEDAACCICLTMYEDNDELRELACSHLFHKDCVDKWLKINASCPLCKGEVGEVENARGSSGSVQDAGQQVQNI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0587 426 SUPERFAMILY RING/U-box 350 406 - -
Lele28g0587 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 416 IPR013083 -
Lele28g0587 426 MobiDBLite consensus disorder prediction 68 93 - -
Lele28g0587 426 Pfam Ring finger domain 358 400 IPR001841 -
Lele28g0587 426 CDD RING-H2_RNF111_like 359 400 - -
Lele28g0587 426 MobiDBLite consensus disorder prediction 40 100 - -
Lele28g0587 426 SMART ring_2 359 399 IPR001841 -
Lele28g0587 426 ProSiteProfiles Zinc finger RING-type profile. 359 400 IPR001841 -
Lele28g0587 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0587 Lele-ChrLele28 3759745 3763038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0587 14 409 C3H Transcription Factor Family AT1G80400 50.500 3.36e-141 407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0585 25 3735379 3738097 Lele28g0587 28 3759745 3763038 hybridization
Lele26g0601 26 3834253 3837000 Lele28g0587 28 3759745 3763038 hybridization