Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0583 ATGCATGTCAAATCGGCACAATCATCGTATCGGGATCGGACACAGGAGTTCCGGGGTATAGCAGAGAGGCTAAAGAAGTCAGTGTCATCCGGATCAGGGCCAAACGGGCCAAGCAGTAGTTCAAGATCGGAGGAACAGCGATCTGCGATCGCAATCCAGTCAGAATTCAATAGGAGGGCTTCCAAGATTGGTTATGGGATACATCAGACGTCACATAAGCTTGCTAAGCTGGCCAAGCTGGCAAAAAGGACTTCGGTTTTTGATGACCCCACCATGGAAATCCAAGAGCTCACAGCAGTTATTAAGCAAGATATCACTGCACTGAACTCTGCCGTTGTGGACCTGCAGCTAATCAGCAACGCTAGGAATGACAGTGGAAATATCTCTAGTGACACAACTAGTCATTCAACCACAGTTGTGGATGACCTTAAAACTCGATTGATGAGCACAACAAAAGAATTTAAAGAAGTCCTTACCATGCGAACAGAGAACTTGAAGGTACATGAGAATAGAAGACAGCTCTTTTCTTCCACTGCTTCTAAGGAAGCTGTGAATCCTTTTGTTCGTCAACGTCCCTTGGCTGCAAAGTCAGCTGCTCATATCCCTGCACCCCCATGGGCTAGTGGATCAACATCTTCATCTCAGTCTCTGCCAAAGAATCAAGTGGATGGGGAGAGTCAACCATTGCTTCTGCAGCAGCAGCAATTGGTTCCATTGCAGGATTCTTATATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTTGAATCCACTATTCATGAGTTGAGCAGCATTTTTAATCAATTGGCGACACTCGTTTCCCAACAAGGGGAAGTTGCCATCAGGATTGATGAGAACATGGACGATACGTTGGCTAATGTAGAAGGGGCACAGGGGGCTTTGCTAAAATATCTCCACAGTATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTAATATTTTTTCTCATGGTTTTCCTATTTTTTGTGGCATAG 1002 0.4481 MHVKSAQSSYRDRTQEFRGIAERLKKSVSSGSGPNGPSSSSRSEEQRSAIAIQSEFNRRASKIGYGIHQTSHKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLISNARNDSGNISSDTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKEAVNPFVRQRPLAAKSAAHIPAPPWASGSTSSSQSLPKNQVDGESQPLLLQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLHSISSNRWLMIKIFFVLIFFLMVFLFFVA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0583 333 SMART tSNARE_6 236 303 IPR000727 -
Lele28g0583 333 CDD SNARE_syntaxin5 244 322 - -
Lele28g0583 333 MobiDBLite consensus disorder prediction 28 47 - -
Lele28g0583 333 MobiDBLite consensus disorder prediction 1 23 - -
Lele28g0583 333 MobiDBLite consensus disorder prediction 1 47 - -
Lele28g0583 333 Gene3D - 51 296 - -
Lele28g0583 333 FunFam Syntaxin-32 like 50 296 - -
Lele28g0583 333 MobiDBLite consensus disorder prediction 206 222 - -
Lele28g0583 333 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Lele28g0583 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 241 303 IPR000727 -
Lele28g0583 333 MobiDBLite consensus disorder prediction 198 222 - -
Lele28g0583 333 Pfam SNARE domain 278 329 IPR000727 -
Lele28g0583 333 ProSitePatterns Syntaxin / epimorphin family signature. 247 286 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele28g0583 333 PANTHER SYNTAXIN 50 325 IPR045242 -
Lele28g0583 333 SUPERFAMILY t-snare proteins 54 296 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0583 Lele-ChrLele28 3725337 3728822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0583 1 333 SNARE and Associated Proteins AT3G24350 63.989 1.26e-147 418