Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0581 ATGGCATCTCGGATGAAAGAAGATGAGAAAATTGAAAGAGAAATTCGAAGTCTCTCGAAACTTCCTGAAAATCGGAGATGTATCAACTGCAATAGTTTGGGACCACAATATGTCTGCACAACCTTTTGGACTTTCGTCTGCACAAACTGCAGTGGGATTCAACGAGAGTTTAACCACAGAGTAAAATCAGTATCAATGGCTAAATTTACCGCAGAAGAAGTCCCTGCTCTTCAGTCAGGCGGCAATGAAAAAGCAAAGCAGATTTATTTTAAAGACTGGGATCCTCATCGTCAGTCTTATCCCGATACCAATAACATTCCAAGACTTCGCGATTTCATCAAACAAGTCTATGTGGATCGAAAATTCACCGGTGAAAGGACCCAAAATAATCTTCCCAGACTCAGCTGGAATGACAAGGAGGAGTCCCACGACGGCAGGAAGCTTAGTTTTTCCCGAAGCGAACGTTATGAAGAGAGAAATGATATGCGTAGTCCAAGTTCACGAAACGAGGACAGGAGTGTCAAGTATTATTATGATGACAGAAGAAGTCCCAGATATGCCTCGAGGAATGGGAACCACAGAAGAAATCCTGTAAAAATTGAGGTTGTGGATGATAGAATCCGAGACGATAAATCTAGAACTCGCAGGTTTTCAAGCATAGAGTTAAAGGAAACAGCGGTTTCATCTGATGTGCAAAAGAATGAGGACAGAGGGAAGAAGGGTGCACCTGCCAGTGGAGAGGAACCCGTTGAGGAGAATCCAATTGAACAAAACAACCCAGAAACCGAGATTTTGAGTGTCGTCACATCACAGGTTTCTGATACTGCAACTGCACCGAAAGCTCAGTCTACATCTCAATCAAATGATGGAAGTGACTGGGCACCGTTTGAAATTTCCACAGCGAAGGAGGCTTCTCAAAACCCAAACACAAATACTTCGAAGTGTTCTACAACAGAGACAACAACTAAAACTTTAGATGCTATAGAATTTTTACTCTCTGAATTGTCTGGTCCCTTGTATGCAGCAGCTAGTAGTATGTCCGATGTTCGCACTGCTGATAATGATACTTCAACTGCAAGAGTAGAAGAAATTTCCGTGGATGTGGATTTAGCACCGCCGACCCCAGCAGGCCAGATAATTCCAGTTCCCAACAACGTTGGTGCTTCCTCAGTTACATCAACCAGTGATTCTGATCTGACGCAAACCTCAACAGCTTGTAGCTCAGCGACACAATCAATGAGTCCATCAGTCAGAGATGTCCCTTCTCCTAATCAGCCAGAAGTTGCTTCTAAAGCGCTAGACCTTTCAAACTCTCTTATGGAACTATCTCTTCAAGCCGCATCAGAACCTACTCTAGACACCAGATCTGATGTCAGATCCCAACCTAGAATAACACAAACCAAGTCTATGGGAAGAAAGGAACTTCCAGAGAATCTCTTTACAACAAGCTACTTGCCAGGCCATGCACCGCAAGCAGGCTGGCAGAATTTTCAACCTCATTATATGGGATACGGCGGCTTGCAGTATTATTCTAATGCAGCACCAATCTCGGCATTTCCCCCTGCAGCAAAGTCCACAAACCCATTTGATGTAACTGAGGGGAGACTTCAAGTCCATGCTTCTCCATTTCATACTATGGCAAATTTGCATGGTGCACAAACTGCTATGTCAACTGGAGCAGGATTAGGGCGTGCTTCAAGCCTTGGGGTTTTAGGCTCGATGGTGCCTCAATCCCCAAATTATTCATCTTCAATGCCTCTGCAATCTCCCTTTACTCCTGGATTTCCTGCTGGTGCATACTTTGAGCCAGTTAACAATAATATGCAAGCTCCCAGACCTCGAAGAGCTGGCAGCTTCAATGGCGAAACAACCTTCCAACATTCAGCTGGGGGATATGTGGCTCCCGGCTACCCTCTAAATTCTTTTCCCAAGGCAGGAGGAAATCCATTTGGATAG 1956 0.4453 MASRMKEDEKIEREIRSLSKLPENRRCINCNSLGPQYVCTTFWTFVCTNCSGIQREFNHRVKSVSMAKFTAEEVPALQSGGNEKAKQIYFKDWDPHRQSYPDTNNIPRLRDFIKQVYVDRKFTGERTQNNLPRLSWNDKEESHDGRKLSFSRSERYEERNDMRSPSSRNEDRSVKYYYDDRRSPRYASRNGNHRRNPVKIEVVDDRIRDDKSRTRRFSSIELKETAVSSDVQKNEDRGKKGAPASGEEPVEENPIEQNNPETEILSVVTSQVSDTATAPKAQSTSQSNDGSDWAPFEISTAKEASQNPNTNTSKCSTTETTTKTLDAIEFLLSELSGPLYAAASSMSDVRTADNDTSTARVEEISVDVDLAPPTPAGQIIPVPNNVGASSVTSTSDSDLTQTSTACSSATQSMSPSVRDVPSPNQPEVASKALDLSNSLMELSLQAASEPTLDTRSDVRSQPRITQTKSMGRKELPENLFTTSYLPGHAPQAGWQNFQPHYMGYGGLQYYSNAAPISAFPPAAKSTNPFDVTEGRLQVHASPFHTMANLHGAQTAMSTGAGLGRASSLGVLGSMVPQSPNYSSSMPLQSPFTPGFPAGAYFEPVNNNMQAPRPRRAGSFNGETTFQHSAGGYVAPGYPLNSFPKAGGNPFG 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0581 651 MobiDBLite consensus disorder prediction 228 246 - -
Lele28g0581 651 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Lele28g0581 651 MobiDBLite consensus disorder prediction 370 428 - -
Lele28g0581 651 CDD ArfGap_AGFG 12 122 - -
Lele28g0581 651 MobiDBLite consensus disorder prediction 130 197 - -
Lele28g0581 651 MobiDBLite consensus disorder prediction 447 473 - -
Lele28g0581 651 SUPERFAMILY ArfGap/RecO-like zinc finger 12 123 IPR037278 -
Lele28g0581 651 MobiDBLite consensus disorder prediction 136 187 - -
Lele28g0581 651 PANTHER ARFGAP/RECO-RELATED 245 651 IPR044820 GO:0005096
Lele28g0581 651 MobiDBLite consensus disorder prediction 300 319 - -
Lele28g0581 651 MobiDBLite consensus disorder prediction 225 294 - -
Lele28g0581 651 MobiDBLite consensus disorder prediction 383 428 - -
Lele28g0581 651 Gene3D Arf GTPase activating protein 1 133 IPR038508 -
Lele28g0581 651 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 130 IPR001164 GO:0005096
Lele28g0581 651 MobiDBLite consensus disorder prediction 255 294 - -
Lele28g0581 651 MobiDBLite consensus disorder prediction 447 472 - -
Lele28g0581 651 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Lele28g0581 651 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Lele28g0581 651 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lele28g0581 651 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Lele28g0581 651 SMART arf_gap_3 12 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0581 Lele-ChrLele28 3709198 3713954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0581 12 122 C2H2 Transcription Factor Family AT4G05330 31.897 8.28e-11 62.0