Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0577 ATGGGAGAAGTTGCTGTTATGCACTCAGAGTCTCTGCATTTTGAATGCAAAGACCTGAAACATGTGAATGTGAATGAGGTGTATCCTCCACAGTCAAATGCAGATCACTTGCCTGTAGAAGAATCAAGTCAGTCAAGAGATAACAAAAATATCAATGAATTACAAGAAAGAGGATACTTGCAATATGGATGTTCACACTACCGAAGGAGATGTCGTATCAGAGCCCCTTGTTGCAATGAGATTTTTGATTGCCGTCATTGTCATAATGAAGCAAAAAATGATATTGACATTGATCAGAAGTATAGACATGACATTTCCCGCCATCAAGTCAGACAGGTGATATGTTCACTTTGTGGGACTGAACAAGAGGTTCGGCAGAACTGTATAAACTGTGGTGTTTGTATGGGAAAATACTTTTGTGAGACATGCAAGCTCTTTGATGATGATATATCTAAGCAACAGTATCATTGCAATGGCTGTGGGATTTGCAGAGTTGGAGGACGTGAGAATTTCTTCCATTGTTACAACTGTGGATGCTGCTACTCTATCATGATGAAAAATAGTCACCCATGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTCTGTTTTGAGTATTTATTTGAGTCCAGAAATGATGTTACCGTTATGCCTTGTGGGCATACAATACACAAGAGTTGCCTGAATGAAATGAGAGAACATTTCCAGTATGCATGCCCTCTCTGCTCAAAATCAGTTTGTGATATGTCAAAGGTTTGGGAGAGGTTTGACCTGGAGATTGCCGCTACTCCCATGCCTGAACCATTCCAAAATAAAATGGTATGGATCCTTTGCAATGATTGCGGGAAAACTTCGCACGTTCAGTTCCATGTTGTGGCTCAGAAGTGTTCGAACTGTAAATCCTATAACACGCGACAAACAAGAGGTTGA 930 0.4075 MGEVAVMHSESLHFECKDLKHVNVNEVYPPQSNADHLPVEESSQSRDNKNINELQERGYLQYGCSHYRRRCRIRAPCCNEIFDCRHCHNEAKNDIDIDQKYRHDISRHQVRQVICSLCGTEQEVRQNCINCGVCMGKYFCETCKLFDDDISKQQYHCNGCGICRVGGRENFFHCYNCGCCYSIMMKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWERFDLEIAATPMPEPFQNKMVWILCNDCGKTSHVQFHVVAQKCSNCKSYNTRQTRG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0577 309 Gene3D - 271 309 - -
Lele28g0577 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Lele28g0577 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Lele28g0577 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Lele28g0577 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Lele28g0577 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Lele28g0577 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Lele28g0577 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Lele28g0577 309 SMART ring_2 200 242 IPR001841 -
Lele28g0577 309 Pfam Ring finger domain 199 242 IPR001841 -
Lele28g0577 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 43 308 - -
Lele28g0577 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Lele28g0577 309 SUPERFAMILY RING/U-box 199 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0577 Lele-ChrLele28 3696571 3699316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0577 62 305 C2H2 Transcription Factor Family AT3G18290 39.200 3.01e-53 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0577 28 3696571 3699316 Lele01g0594 01 3500684 3502659 CCT
Lele28g0577 28 3696571 3699316 Lele02g0583 02 3494369 3495562 CCT
Lele28g0577 28 3696571 3699316 Lele03g0598 03 3523577 3524757 CCT
Lele28g0577 28 3696571 3699316 Lele04g0602 04 3643851 3645039 CCT
Lele26g0589 26 3768665 3771411 Lele28g0577 28 3696571 3699316 hybridization