Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0567 ATGGCAGCGGCTTCGAAGATAACAGTCGCCGCTAAACTCGTATACCGCCTCCGTGATATTACTGTTCGCACCACCAACTCTTCTCCTTCTCTCATTGTTTCTTCTAGCTTCACGCTGAGGTCCATTACTAGTGCTAGTACTTCCCAGAAGAAGAAGAAGCAGAAATCGGCGGCGGCGGTTGCGGTACAGAAATCGGCGGCGGCGGCGGGTTTGGTGAAGGAAAAGAGGAGGACGCGTTCTTACAAGGAATTTGATAAGGAATCGATTTTGCGATATGGAGATAAACCCTCTCATATTCCTGTGATGCTCGCTGAAGTACTGGACGTCTTCTCATCTACTTGTTGGAGACCTTTACAATCTTTCGTCGATTGCACCCTCGGAGCTGGTGGCCATTCCTCCGCTATAATTAATACTCATCCAGAGTTGAAGTTTTTTGTTGGCATGGACGTAGATCCTGTGGCACATGAGAAGGCTCAAACTCGAATCAATTCCATCTTGCATTCTGACTCAGACTCTAGTAGCCCTGCTTCTGACCTGAAAGTATACCACTTGTTAAAAAATTTTCGACATATCAAGTCTGCAATAAGGGAAACTGGCGAGGAACACTTCGACAGTGGAGTTGATGGCATTTTGATGGACTTGGGAATGTCATCCATGCAGGTGGACAATCCTGAGAGAGGATTCAGCGTGCTCAGTGATGGACCACTTGACATGCGTATGGACCCTCAGGCAAGTCTTCGAGCTGAAGACATATTAAATTCTTGGCCATCTGCTGAAGTGGGCCGCATCCTGCGAGAATATGGGGAAGAAAGCAATTGGCGCACTTTGCAAAATAAGATTGTTGAAGCCCGATCACATGGTGGATTGCATTCTACTAGTGATTTGGTAGATCTTATTAAGCGCATGTCTCGTACAACGAAAGGTGGAAGGCAAGGTTGGATAAAGACAGCAACCCGGGTATTTCAAGCTCTGAGAATCGCAGTTAACGATGAACTGAACGCCCTTCAAGATTCCCTGAATTCTTGCTTTGAATGCCTGGCACCTGGAGGTAGGCTTGCAGTCATATCTTTCCACAGTCTGGAGGACAGAATTGTGAAGCAAACGTTTCTTGAAATTATTAAAGAGAAGGCCAATGGTATAGACGAAGAGGAGAAGAACAATAATGATTCAAGAGATATGAGAAGTGAGATTGAAGAGAAACAAACATGGATAAGACAAACAGTACATGGATCAAATGGGACAATTTTAACGAAAAGGCCAATCACGCCATCAGGAGAGGAAGAAAAATTGAACCGCCGAAGTAGGAGTGCCAAGCTCAGGGTAATTCGGAAGCTCTGA 1338 0.4559 MAAASKITVAAKLVYRLRDITVRTTNSSPSLIVSSSFTLRSITSASTSQKKKKQKSAAAVAVQKSAAAAGLVKEKRRTRSYKEFDKESILRYGDKPSHIPVMLAEVLDVFSSTCWRPLQSFVDCTLGAGGHSSAIINTHPELKFFVGMDVDPVAHEKAQTRINSILHSDSDSSSPASDLKVYHLLKNFRHIKSAIRETGEEHFDSGVDGILMDLGMSSMQVDNPERGFSVLSDGPLDMRMDPQASLRAEDILNSWPSAEVGRILREYGEESNWRTLQNKIVEARSHGGLHSTSDLVDLIKRMSRTTKGGRQGWIKTATRVFQALRIAVNDELNALQDSLNSCFECLAPGGRLAVISFHSLEDRIVKQTFLEIIKEKANGIDEEEKNNNDSRDMRSEIEEKQTWIRQTVHGSNGTILTKRPITPSGEEEKLNRRSRSAKLRVIRKL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0567 445 Coils Coil 380 400 - -
Lele28g0567 445 TIGRFAM TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 97 444 IPR002903 GO:0008168
Lele28g0567 445 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 98 445 IPR002903 GO:0008168
Lele28g0567 445 MobiDBLite consensus disorder prediction 414 433 - -
Lele28g0567 445 Gene3D Putative methyltransferase TM0872, insert domain 224 330 IPR023397 GO:0008168
Lele28g0567 445 FunFam Ribosomal RNA small subunit methyltransferase H 224 331 - -
Lele28g0567 445 SUPERFAMILY Putative methyltransferase TM0872, insert domain 226 329 IPR023397 GO:0008168
Lele28g0567 445 Gene3D Vaccinia Virus protein VP39 98 442 IPR029063 -
Lele28g0567 445 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 98 445 IPR029063 -
Lele28g0567 445 Pfam MraW methylase family 97 444 IPR002903 GO:0008168
Lele28g0567 445 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 97 445 IPR002903 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0567 Lele-ChrLele28 3611922 3614860 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0564 25 3584490 3589249 Lele28g0567 28 3611922 3614860 hybridization