Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0565 ATGGTAAAAGAAAAGAATCCTAAGCGATATTTTATCCGGCAGCTGAGACCCGCCTTTCTTTCTCCCAGGATTTCGTTGCATTCTAGTATGAGTAGGCCAACTACACGAAGTAAAAATAAAAGGCAAAGACAAGTGGATGATGGTGCTAGCACTTCTGAAATATGGAGGAAAATTCATGAAAGTGGCGTGGTAACTGATGATGACATAAATCAACTTTATATGATTTGGAAGCCAATCTGTTCAAGCTGCCGTGTCAATACCAAAGACAACCCTAATTGCTTTTGTGCGTTGGTTCCACCTCCCAATGGAAACCGGAAATCTGGCTTATGGCAGAAGATATCAAGTATTGTAGACAATCTTGGTCCTGACCCAACCAAGGACCTTCGTGCATCTGTTAATTCACCTGCGGGTCTTACAAATCTTGGGGCCACATGCTATGCCAATAGCATACTGCAGTGCTTATACATGAATAAATGTTTCCGGGAAGGCATATTTTCTGTAGAACCAGATCTTTTGCAACAGCACCCAGTGTTAAATCAACTGGTGCGGCTTTTTGTGCAGTTGCACATTAGTAAAAGGGCTTTTGTGGATTCATTTCCGTTTGTCAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTTCTGACATTGCTTTTGTCTTTGCTTGAGCGTTGTCTAAGCCATTCTGAAGTTCCTAAAGCAAGAACAGTAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTCACAACCTGCTCACAATGTGGAAGAGACTCTGAAGCATCTTCTAAAATGGAAGACTTCTATGAGCTGGAGTTAAATGTCAAGGGATTTAAAAGTTTAGATGAGAGCCTGAATGATTATCTTGCCGTGGAGGAGCTTTGTGGGGATAATCAATATTTTTGCGCATCGTGTAAAACAAGAGTGGATGCTACACGTAGCATAAAGCTGCGCACATTACCTGGTGTACTTAATTTTCAACTTAAACGTTGTGTCTTCCTTCCAGAGACTACAACAAGGAAGAAAATTACTTCTGCATTTTTATTTCCAGTTAAGCTTGACATGCAGCCTAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTATCAGCTGTACTGATTCACAAGGGAACTACTGTTAATAGTGGCCATTATGTAGCTCACATCAAAGACGAGAATACTGGGCAATGGTGGGAGTTTGATGATGAGCATGTCACTAAATTAGGCTGTCATCCATTTGGTGATAGATCTTCAAATTCTACGGCAAAATCTGTTAGGACTGATCCTGTTCATTCCGATGCCTCTGAAGTGAGGATAGCTGACAGTAATGGAAATGGTCTAGATGCCTCTCACTCACAATCTTCTCTTGTGGAGACATTTTCATCTAGTGATGCATACATGTTGATGTACAATCTTAAGCATACAAAAAATGTACTCAAAATGGGGGATGTGCTCAGCAATGGTGATGCTGTTCCTGCACGAGATAGTTTTCCTTTTTTATCTCATCTTTTTGATGAGATTCAGAACCTTAATGCTTCATATGTTGATCAGTGCGCACAATACAATCATAGGAAAGAGTTGGAACTAAGTCGAATTAATGAAAGGAGACAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTTGAGCAACCATTTTACTGGATTTCTAGTGAATGGCTTCGCCAGTGGGCTGACAACATTAGTCCATGCACTCTTGACAATACATCCATTCAATGCTCACATGGGAAAGTTCCTGTATCCAAGGTTACTTCAATAAAGCGATTGTCCGATAAAGCATGGGATAAATTGTTTTCAAAGTATGGTGGGGGGCCTACACTGTCCCGTGGTGATTGCTGTTGGGATTGTCTTATTGATGGAGCTCACTCTGTGGTGTCAGCTGACACCTATAGGGACCGAAGAGAATCCATGAAGCAACTTGCACGGAACATTCTTGACGGAAATTGTCCAGATGGAAAGTATTATGTATCTAGACCTTGGTTGCAGCAGTGGTGGAAAAGAAAAGTGCTTGATGCTCCATCTGAAGCAGATGCTGGACCAACATCATCAATTAGTTGCCCGCATGGGCAACTTTTACCTGAGCAAGCTCATGGTGCTAAGCGGGTGCTTGTTCCTGAGAGTCTTTGGCACTTCTTATATGAAGATGCTCTTTCTGTAAAACCTGATTATGCTTTGGGTTGCCCAACATTTCCTTCAGACTCAATGCCTTGTTCCCAATGCAGCGAAGAATTATCTGAAGTAGCATGCTTGGAGGACTCTTTAAGATTAGTGAAGCAAGTGCAACGTCAGAATCACGAGAAACTATTACTGGCTAAAAGTATGCCACTCTCTTTGCATTGCAAATATTTCCTAGTGCCTTCTTCATGGATTTCAAAATGGAGAAGTTACATGAGTCCATCCGTCAAGAATTCAGACAAACCTGAAACTTTAGATGGGATAATCAATTCCCTTATGTGTGAAAAGCACTCCCTCCTTGTGGAAAAGCCCCCAGAACTGGTTTTCAGACGCGGTGCTGTAGTCCAGCGAGAATCTTCTGCAGGGGGTTTAACTATGATATCTGCGAATGATTGGAAATGCTTTTGTGAGGAATGGGGTGGTACTGAGACAAAAGGTATATCAGCAACAATTGAGAATACCAGTGATTCAGAGAATATTTTGACTCGATTCAGCTCAGAGACAACGATGTGTGAGGATCAGTTGAATGACAAAGTGAATGATGATAGCGGGACTAGACAGCTGCTTATTAAGACTTGTCCAGAGATTTGTGAAACTTGCATTGGAGAAAGAGAAAGCTGTGAGTTAATGCAGAAACTTAACTATAGCAATGAGAACATATCTGTGATTCTTGTAAGGGGAAAGGAAGTTCCTAGATCCATATTGGAGGCTTCAAAGGGCTCTGTTGAAACAGATCGACGTGTTTCCAAGCGCTCCCGGAAATCTAAAAATGGGACTTCGATAAGTCTTAAAGTTTCTGCTTCAACATCACTGTACCAGCTAAAAATGATGATATGGGAGGCCTTTGGGGTTGTAAAGGAGAACCAGATATTACAGAAAGGTGACAGGACAATTGATAATGAGGATGAATGTGCTACGCTTGCAGATGTAAATATATTTGCCGGAGATCAGATCATAGTGAGGGACTCTGAGATCCATGAAAATAGAGATATTGCTGATGAGATTTATGATGATAAAATGGAAATGCAGCGGAGTGAAGGAGGGTTTCGTGGAACTCTTCTGACAGCAGACATTTCATCTCAGGTTGTTTGA 3312 0.4152 MVKEKNPKRYFIRQLRPAFLSPRISLHSSMSRPTTRSKNKRQRQVDDGASTSEIWRKIHESGVVTDDDINQLYMIWKPICSSCRVNTKDNPNCFCALVPPPNGNRKSGLWQKISSIVDNLGPDPTKDLRASVNSPAGLTNLGATCYANSILQCLYMNKCFREGIFSVEPDLLQQHPVLNQLVRLFVQLHISKRAFVDSFPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSEVPKARTVVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGFKSLDESLNDYLAVEELCGDNQYFCASCKTRVDATRSIKLRTLPGVLNFQLKRCVFLPETTTRKKITSAFLFPVKLDMQPRLSEPSQSELIYDLSAVLIHKGTTVNSGHYVAHIKDENTGQWWEFDDEHVTKLGCHPFGDRSSNSTAKSVRTDPVHSDASEVRIADSNGNGLDASHSQSSLVETFSSSDAYMLMYNLKHTKNVLKMGDVLSNGDAVPARDSFPFLSHLFDEIQNLNASYVDQCAQYNHRKELELSRINERRQEVRSVLAEAPVQPLEQPFYWISSEWLRQWADNISPCTLDNTSIQCSHGKVPVSKVTSIKRLSDKAWDKLFSKYGGGPTLSRGDCCWDCLIDGAHSVVSADTYRDRRESMKQLARNILDGNCPDGKYYVSRPWLQQWWKRKVLDAPSEADAGPTSSISCPHGQLLPEQAHGAKRVLVPESLWHFLYEDALSVKPDYALGCPTFPSDSMPCSQCSEELSEVACLEDSLRLVKQVQRQNHEKLLLAKSMPLSLHCKYFLVPSSWISKWRSYMSPSVKNSDKPETLDGIINSLMCEKHSLLVEKPPELVFRRGAVVQRESSAGGLTMISANDWKCFCEEWGGTETKGISATIENTSDSENILTRFSSETTMCEDQLNDKVNDDSGTRQLLIKTCPEICETCIGERESCELMQKLNYSNENISVILVRGKEVPRSILEASKGSVETDRRVSKRSRKSKNGTSISLKVSASTSLYQLKMMIWEAFGVVKENQILQKGDRTIDNEDECATLADVNIFAGDQIIVRDSEIHENRDIADEIYDDKMEMQRSEGGFRGTLLTADISSQVV 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0565 1103 CDD Peptidase_C19L 137 476 IPR033841 GO:0004843
Lele28g0565 1103 Pfam Ubiquitin carboxyl-terminal hydrolase 137 476 IPR001394 GO:0004843|GO:0016579
Lele28g0565 1103 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 137 152 IPR018200 GO:0004843|GO:0006511
Lele28g0565 1103 SUPERFAMILY DUSP-like 538 626 IPR035927 -
Lele28g0565 1103 FunFam ubiquitin carboxyl-terminal hydrolase 48 123 479 - -
Lele28g0565 1103 SUPERFAMILY Ubiquitin-like 995 1064 IPR029071 -
Lele28g0565 1103 ProSiteProfiles DUSP domain profile. 771 891 IPR006615 GO:0004843
Lele28g0565 1103 SMART dusp 554 630 IPR006615 GO:0004843
Lele28g0565 1103 CDD Ubl_USP48 993 1094 IPR044743 GO:0004197|GO:0004843|GO:0016579
Lele28g0565 1103 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 71 479 - -
Lele28g0565 1103 Gene3D - 768 887 IPR035927 -
Lele28g0565 1103 Gene3D Cysteine proteinases 122 479 - -
Lele28g0565 1103 Gene3D - 528 626 IPR035927 -
Lele28g0565 1103 MobiDBLite consensus disorder prediction 26 50 - -
Lele28g0565 1103 SUPERFAMILY Cysteine proteinases 133 480 IPR038765 -
Lele28g0565 1103 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 373 391 IPR018200 GO:0004843|GO:0006511
Lele28g0565 1103 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 136 479 IPR028889 -
Lele28g0565 1103 SUPERFAMILY DUSP-like 664 729 IPR035927 -
Lele28g0565 1103 ProSiteProfiles DUSP domain profile. 643 750 IPR006615 GO:0004843
Lele28g0565 1103 ProSiteProfiles DUSP domain profile. 536 627 IPR006615 GO:0004843
Lele28g0565 1103 FunFam Ubiquitin carboxyl-terminal hydrolase 26 527 625 - -
Lele28g0565 1103 Gene3D - 992 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0565 Lele-ChrLele28 3600458 3608422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0565 134 411 Miscellaneous Gene Families AT4G31670 30.000 4.38e-25 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0565 28 3600458 3608422 Lele01g0588 01 3458821 3461920 CCT
Lele28g0565 28 3600458 3608422 Lele02g0580 02 3473484 3476685 CCT
Lele28g0565 28 3600458 3608422 Lele03g0591 03 3485374 3489353 CCT
Lele28g0565 28 3600458 3608422 Lele04g0596 04 3617856 3621033 CCT
Lele25g0562 25 3575230 3581567 Lele28g0565 28 3600458 3608422 hybridization
Lele26g0576 26 3665966 3674442 Lele28g0565 28 3600458 3608422 hybridization