Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0559 ATGTTCTCCAGCAGCCAGCTTGATGCCACTGCGGCCTTCTCAGGCGGCGGATTCATGGCCACAGAGTCTACCCAGCTCAACGATTCATCTCCGTTACCGGCCAAAGTAACCTTGGTTGGTATGGTGTTTGAGAAAGTTGACCGAAACACTGACGTTAGTTTTGTTCTAGATGATGGAACAGGAAGGATCAAATGTCTTAGATGAGATGGTATGTATGTTCGTGTGTATGGGCATTTGAAAAGCTTTCAAGGTGTAAAACAGGTTGTTGCTTTCTCAATCAGGTTTACCACAGTACATTCAATCTGCGACAACTTGAGGATCATGGGACATGGGCCAGTGATGAGTTTTGATGAGATTTCTTTTCACTTTATTGATTGCATACATAATCATCTCCGCTCCAAAGTAAAGGTTGAAGGAGTTACTCCTACACGTCCTCCACTTATAAACTCATTTCATGCATCAAATGGAAATCAAACACCATCATCTAATCCATTATATGCGCAATATAGCATGGATGGGCTTAAGGGTTGTGATAAATTGGTCCTTGATTATCTGAATCAGCATTCAGACATGTCTGATGAAAGGGGAATACATGTTAATGAGCTTTCTCGAGAACTTAAACTTCCATGGGACAAGATCATGTTGTCATTGAAGACTCTTGGCGATGATGGACTTGTATACTCCACCATTGATGACAATCATTACAAGCAAGCTTGA 717 0.417 MFSSSQLDATAAFSGGGFMATESTQLNDSSPLPAKVTLVGMVFEKVDRNTDVSFVLDDGTGRIKCLRXDGMYVRVYGHLKSFQGVKQVVAFSIRFTTVHSICDNLRIMGHGPVMSFDEISFHFIDCIHNHLRSKVKVEGVTPTRPPLINSFHASNGNQTPSSNPLYAQYSMDGLKGCDKLVLDYLNQHSDMSDERGIHVNELSRELKLPWDKIMLSLKTLGDDGLVYSTIDDNHYKQA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0559 238 FunFam Replication protein A 32 kDa subunit 169 238 - -
Lele28g0559 238 SUPERFAMILY "Winged helix" DNA-binding domain 171 236 IPR036390 -
Lele28g0559 238 Gene3D - 168 238 IPR036388 -
Lele28g0559 238 Pfam Replication protein A C terminal 149 233 IPR014892 -
Lele28g0559 238 Gene3D - 28 135 IPR012340 -
Lele28g0559 238 PANTHER REPLICATION PROTEIN A-RELATED 29 236 IPR040260 -
Lele28g0559 238 SUPERFAMILY Nucleic acid-binding proteins 34 132 IPR012340 -
Lele28g0559 238 CDD RPA2_DBD_D 36 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0559 Lele-ChrLele28 3562530 3565499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0559 1 236 Core DNA Replication Machinery Family AT2G24490 34.247 1.66e-48 159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0555 25 3531703 3534759 Lele28g0559 28 3562530 3565499 hybridization
Lele26g0570 26 3629969 3633483 Lele28g0559 28 3562530 3565499 hybridization