Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0555 ATGAAATTTAAATTGAATAAACAAGAGATGGATTATTATTCTGGTAAACGAGCCATAGATGGGGTGGTAGTACCTAAAAAGGGGATGGCTCGTGTGTTTAGAGATACTGCTAATGCTAGAGACCGTAATGGCCAGTTTTGCAGCCCACCTGGTTGCAGCAGTAGATTGAATTCTCCTAAGGGTGCTCAATTTGGTTCATCTGAAAAAGGTAAATCTTCGAGGCCTCCAATCCGATCTTCAAGTCGTAAGGAAGCAATTGGAAGTTCCTCTAGAACTTTACCAGGATCTTATAACCCAGGAAAATCCCCTATGGAACCCCGGAAAACAGTATCCTGTCAATCATCAGAGACTGTTCCATGTGAAACGATTAGTTTAGAGGATGAAACAGAAAATTCTGAGCTCATCCCACCACCTGAAAAAATTCAAAGAGGGCCTCAAGCTGAAGAGGGGAGTTCAGAGTCTGCTAATATCATATCAATGGAAGTAGGAAGCTCTAGTGTAGCATCAAACGCAACATATAGGAGGAATCTTCGTCAGAAGCCTGGATTGAATGTTCAAGAATTTAAAAGCTCTGGCTCAGCGACACGCACTGGAGGTAGCAGTTATGGGTTGAGGAACCTCAGATGCAATTCTATATCTGATGTCATCCCTTCAGGTTGTTCATCATCAGATTCAAACCCGAATAGAAGGAAATATGTGATGAAAAAGAGAAACTGTGAAGGAGAAACTAGTTCTACTACTAGAGGTAAGAAGATGAGTGGATCTTCAATGGACGGACAAAATTCTGGCCCCAGAAATGGTATATCCATATCAGATTCAAGAAGAACCAGAAACTTTCCTCCTCACAGGGATAACAACAACATTGGATCAGTTAGAACTAGAAGATCTTTCAATGGTCATGCCAGGGGAAGGCTTCCTAGCCAAGCAAATGAAAACCCTGCACCACCCAATGAGTCCCCAATTACTATACCATCTTTGCCTCATTCCAGTGACCTTAGTGCTCATGATTTATTACATCATTCCTCGTTGGAGACTCCCCTCAGAAGTCCAAGATCTTACAGTAGACCAGGTAGCAGCAGTGAGCGGTTATTTGGCGTTTTGCCCCCATCTCCTTCAGAATATGGGATCACTCGTTCTCTCCTGAACCGGGACAGCTTTCGACGATACAACATGGATGGTATTGCAGAGGTATTATTGTCACTTGAGAGGATTGAACAAGATGAGGATCTTACACATGAGCTAATTCTTTTATTGGAGACCAACCTGTTCCTTAATGGACTAAACTTCTATGATCAACATAGAGAAATGCGATTGGATATCGATAACATGTCATACGAGGAACTATTGGCTTTGGAAGAGACGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTCTCAGAATGCCTAAAGAGAAGCTCGTATCAACCTGCCACTTCAGATGATGCAGCCGAGAGCTGCAATGAGGATAATGATGACATAAAATGCAGCATCTGCCAGGAGGAATATGTGGAAGCAGATGAAGTGGGGAGTCTGCAATGCGAGCATAGATATCATGTGGGGTGCATACAGCAATGGCTGCGCCTCAAGAACTGGTGTCCTATTTGCAAAGCCCCTGCGGCCCCATCACTTTCGTCTTCTTGA 1647 0.4366 MKFKLNKQEMDYYSGKRAIDGVVVPKKGMARVFRDTANARDRNGQFCSPPGCSSRLNSPKGAQFGSSEKGKSSRPPIRSSSRKEAIGSSSRTLPGSYNPGKSPMEPRKTVSCQSSETVPCETISLEDETENSELIPPPEKIQRGPQAEEGSSESANIISMEVGSSSVASNATYRRNLRQKPGLNVQEFKSSGSATRTGGSSYGLRNLRCNSISDVIPSGCSSSDSNPNRRKYVMKKRNCEGETSSTTRGKKMSGSSMDGQNSGPRNGISISDSRRTRNFPPHRDNNNIGSVRTRRSFNGHARGRLPSQANENPAPPNESPITIPSLPHSSDLSAHDLLHHSSLETPLRSPRSYSRPGSSSERLFGVLPPSPSEYGITRSLLNRDSFRRYNMDGIAEVLLSLERIEQDEDLTHELILLLETNLFLNGLNFYDQHREMRLDIDNMSYEELLALEETMGSVSTALTEEALSECLKRSSYQPATSDDAAESCNEDNDDIKCSICQEEYVEADEVGSLQCEHRYHVGCIQQWLRLKNWCPICKAPAAPSLSSS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0555 548 FunFam E3 ubiquitin-protein ligase arkadia 459 543 - -
Lele28g0555 548 MobiDBLite consensus disorder prediction 36 153 - -
Lele28g0555 548 MobiDBLite consensus disorder prediction 177 228 - -
Lele28g0555 548 MobiDBLite consensus disorder prediction 82 97 - -
Lele28g0555 548 ProSiteProfiles Zinc finger RING-type profile. 497 538 IPR001841 -
Lele28g0555 548 MobiDBLite consensus disorder prediction 177 368 - -
Lele28g0555 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 545 IPR013083 -
Lele28g0555 548 SUPERFAMILY RING/U-box 491 543 - -
Lele28g0555 548 MobiDBLite consensus disorder prediction 107 125 - -
Lele28g0555 548 Pfam Ring finger domain 496 538 IPR001841 -
Lele28g0555 548 MobiDBLite consensus disorder prediction 229 244 - -
Lele28g0555 548 MobiDBLite consensus disorder prediction 245 275 - -
Lele28g0555 548 MobiDBLite consensus disorder prediction 41 74 - -
Lele28g0555 548 MobiDBLite consensus disorder prediction 345 359 - -
Lele28g0555 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 109 542 IPR045191 GO:0061630
Lele28g0555 548 CDD RING-H2_TTC3 496 538 - -
Lele28g0555 548 SMART ring_2 497 537 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0555 Lele-ChrLele28 3525372 3528405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0555 376 541 C3H Transcription Factor Family AT2G15530 41.916 7.45e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0588 01 3458821 3461920 Lele28g0555 28 3525372 3528405 CCT
Lele02g0580 02 3473484 3476685 Lele28g0555 28 3525372 3528405 CCT
Lele03g0591 03 3485374 3489353 Lele28g0555 28 3525372 3528405 CCT
Lele04g0596 04 3617856 3621033 Lele28g0555 28 3525372 3528405 CCT
Lele25g0549 25 3486098 3490839 Lele28g0555 28 3525372 3528405 hybridization
Lele26g0565 26 3591178 3593374 Lele28g0555 28 3525372 3528405 hybridization