Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0548 ATGGCGGTGGAGCTCATGGGGTTTCTGAAAATGGACGAGCAGAAAGCAATTCAGGATGCAGCATCGGAGGGATTAAAGGGCATGGAGAATCTAATTCGGCTTCTCTCCCACAAACCCAATCTCGTCGACTGCGCTGATGTCACCGATGTTACTGTTTCTAAGTTTAAGAAAGTCATATCTCTTCTAAATCGCACAGGCCATGCCCGGTTCAGAAGAGCACCGTTTCCCTCATCTTCTAGCTCGTCTCCTCCCCCTTCTACATCAAAGTTGCCGCTGCCATCATCCGCTGCGCCCTCCTCGGCCAACATTTTGCAATCGCAAATTCCGAATCTATCACCGGCGCAGTTCGCCTCCCCGGCGCCGATCGTAAATCCGGTGACCGTGCATCACGCTCCGATCAACAACAGCACTGCTCCATCCAGTTTTGTTCCGGGTCATTCACAGTCTCTGACTCTCGATTTCACAAAACCTAATTTATTGAGCTCCAACACGAAGTCTCTAGAGCTGGAATTCTCGAAGGAAACCTTCAGCGTGTCTTCAAATTCATCTTTCATGTCGTCGGCCATCACCAGCGACGGTAGCGTATCGAACGGCAAACAGGGATCGTCGATCTTCCTCACACCGACAGCACCAACGGTATCCGGCAGCGGGAAGCCACCCCTGTCGACTGTACCGACGAAGAAGAGATGCCACGACCACCGTGAGCAATCCGACGACATCTCCGCCTCCAGCAAGTGCCACTGTGCAAAAAGAAGGAAGAATCGGATGAAGAAGGTGGTAAGAGTGCCGGCGATTAGTTCGAAGGTCGCTGATATTCCGCCAGACGAGTACTCGTGGAGGAAGTACGGCCAGAAGCCGATCAAGGGATCACCGCATCCAAGGGGTTACTACAAGTGTAGTACGGTGAGAGGGTGTCCCGCGAGGAAACATGTTGAGCGGGCCCCGGATGATCCGGCGATGCTGATCGTAACCTATGAGGGGGAGCACCATCACGCATTGCAGGCCGCGATGCCGAATAACAGAGCTGGGAGTGTTGGGTTGGTATTTCAGGCAACGTGA 1059 0.5326 MAVELMGFLKMDEQKAIQDAASEGLKGMENLIRLLSHKPNLVDCADVTDVTVSKFKKVISLLNRTGHARFRRAPFPSSSSSSPPPSTSKLPLPSSAAPSSANILQSQIPNLSPAQFASPAPIVNPVTVHHAPINNSTAPSSFVPGHSQSLTLDFTKPNLLSSNTKSLELEFSKETFSVSSNSSFMSSAITSDGSVSNGKQGSSIFLTPTAPTVSGSGKPPLSTVPTKKRCHDHREQSDDISASSKCHCAKRRKNRMKKVVRVPAISSKVADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHHHALQAAMPNNRAGSVGLVFQAT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0548 352 MobiDBLite consensus disorder prediction 225 246 - -
Lele28g0548 352 MobiDBLite consensus disorder prediction 71 99 - -
Lele28g0548 352 SMART WRKY_cls 273 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g0548 352 MobiDBLite consensus disorder prediction 208 246 - -
Lele28g0548 352 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g0548 352 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 336 IPR044810 GO:0003700
Lele28g0548 352 Gene3D WRKY domain 257 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g0548 352 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele28g0548 352 FunFam WRKY transcription factor 65 257 334 - -
Lele28g0548 352 Pfam WRKY DNA -binding domain 275 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele28g0548 352 Pfam Plant zinc cluster domain 227 271 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0548 Lele-ChrLele28 3491018 3492519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0548 1 349 WRKY Transcription Factor Family AT2G24570 57.939 4.80e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele28g0548 WRKY 7.8e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0541 25 3447364 3448875 Lele28g0548 28 3491018 3492519 hybridization
Lele26g0558 26 3551281 3552795 Lele28g0548 28 3491018 3492519 hybridization