Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0542 ATGGTGGCAGCATATGCCGCTTGCGCACTCATGCTTGCGCTTCTATTTATGTGCAAGGCGGACGAAACTCTCGTGAACTCGGAAAAGCCAGAACTGTTCTGTTTTCATCTTTTTCGACGGCAAATAGGCCATGGCTTCAGTACTTCGCAACTCCCTATACTTTCTCCAATCAGCTACATAGCTCCTCATATTTTCAGAATCAGTAATGGTGTTAATTTTGGCTTATCGCGTAGGCTAACAAAGTGCACTGACGTTATCCCTGTATTTGCAAGACGAACATTCTGTAAATCTTTGGAATCTCTGAATAATTTCAGTTTCCCATATTTGGAGAAAGGTTTTGGAAGGAGTTTAATGAATGATGGGATTTCCCCTAAGAGATATGTTTCTTATATCCGGAAAGTGGAAACTAGGAACAAAACTATAAATGCTGTAGATGGAAAGCATGATAAACCTACTTTGGGCTTAAAAAGTTCTAATAAACACAAGAAATGGGCAAAATCTTTCGTTGTTCATGGCAAAGATAGAGATAGAGATGTAACTTCTAGTACCTCTGTTTCTAAAGATGTAGATATGCGGAGTGGGGAGTGCAAAATCCCAAAAACACGAACAAAGGAGCCAGATTTGGAAGGAATTCGCTCTGCAAGTTCTTGCATTTTCTCAGAATTACGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAACAGCAGATGTATCATCCAGGGATGCTAGCCGCTACTATGTCCCAGGGTATTATTTCTCATGCATTTATGACTGAAAATGCCATAAGAGTTGCTGGGACCTTCTCTCTTTCCCTTGTCAATTCTTCTGTTTTGACAATCTTGCAGATTGAGCCTATTCCAAGTGGAAATTTGCCTCCGGGATTTGACACTTCTACATGCTGCAGCGTTTATGCAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAAAGTGCTGGTCCTCTCGCTGGGTGCAAGCTCATAAGGAAAGAGAAGTCCTCGTATGGTTTTGTGGATTACCATGACAGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGCCAACTCTATGGTCAGGCACTTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCAAAAGGTTATGGTTTTGTTTCTTTCCGTGATCAGCAGGATGCTCAAAATGCCATCAATGATATGAATGATGGAGGTCAGGAATATAATAATGAGGATGCTCCTGAAAACAGTCATGCCTATACGACCGTTTATGTTGGCAACCTTCCCCATGATGTAACGCAAAATGAACTCCACTATCATTTCCACGCATTGGGGGCTGGAGGGATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTAAGATACAACACTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGAAGAATACTTCGTGGAAAAACAATGAAGTGTTCATGGGGTAACAAGCCAACACCTCCTGGAACAGCTTCAAACCCCCTACCTCCTCCTACACAACCTTATCAAATCCTTCCCACAACAGGGATGAACCAAGGCTATTCTCCTACTGAGTTATTGGCTTATCAGCGTCAACTGGCCTTAAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTTGTGCATATGACTGGTCAACATGGCCTTGCTGCTGCGTCCAATGGCTTAAGCTCTGGGGCATCCCAAGCCATTTATGATGCATATTCTGGTAATTCTTCAAGGCAGCACCTCATGTACTATCGTTGA 1938 0.4298 MVAAYAACALMLALLFMCKADETLVNSEKPELFCFHLFRRQIGHGFSTSQLPILSPISYIAPHIFRISNGVNFGLSRRLTKCTDVIPVFARRTFCKSLESLNNFSFPYLEKGFGRSLMNDGISPKRYVSYIRKVETRNKTINAVDGKHDKPTLGLKSSNKHKKWAKSFVVHGKDRDRDVTSSTSVSKDVDMRSGECKIPKTRTKEPDLEGIRSASSCIFSELRLKLQQQQALMQQALLQQQQMYHPGMLAATMSQGIISHAFMTENAIRVAGTFSLSLVNSSVLTILQIEPIPSGNLPPGFDTSTCCSVYAGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMNDGGQEYNNEDAPENSHAYTTVYVGNLPHDVTQNELHYHFHALGAGGIEEVRVQRDKGFGFVRYNTHEEAELAIQMANGRILRGKTMKCSWGNKPTPPGTASNPLPPPTQPYQILPTTGMNQGYSPTELLAYQRQLALSQAAVSGLSGQALVHMTGQHGLAAASNGLSSGASQAIYDAYSGNSSRQHLMYYR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0542 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 547 IPR000504 GO:0003723
Lele28g0542 645 SUPERFAMILY RNA-binding domain, RBD 306 455 IPR035979 GO:0003676
Lele28g0542 645 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 305 550 - -
Lele28g0542 645 Coils Coil 219 239 - -
Lele28g0542 645 Gene3D - 393 459 IPR012677 -
Lele28g0542 645 SUPERFAMILY RNA-binding domain, RBD 462 556 IPR035979 GO:0003676
Lele28g0542 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 392 467 IPR000504 GO:0003723
Lele28g0542 645 Gene3D - 460 551 IPR012677 -
Lele28g0542 645 SMART rrm1_1 474 543 IPR000504 GO:0003723
Lele28g0542 645 SMART rrm1_1 308 377 IPR000504 GO:0003723
Lele28g0542 645 SMART rrm1_1 393 468 IPR000504 GO:0003723
Lele28g0542 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 394 455 IPR000504 GO:0003723
Lele28g0542 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 375 IPR000504 GO:0003723
Lele28g0542 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 541 IPR000504 GO:0003723
Lele28g0542 645 Gene3D - 220 392 IPR012677 -
Lele28g0542 645 CDD RRM3_TIA1_like 473 547 - -
Lele28g0542 645 FunFam Oligouridylate-binding protein 1C 451 551 - -
Lele28g0542 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 381 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0542 Lele-ChrLele28 3453224 3462216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0542 299 547 Eukaryotic Initiation Factors Gene Family AT4G34110 26.316 2.31e-19 90.5