Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0515 ATGGCGACACCATCTTTGGACGAAGAAACCGCTAAGAAAGTGATACGACAAGTTGAGTTCTACTTCAGTGACAGCAACCTTCCTATGGACAATTTTCTCAAGAAGTGTATAGGTGAAAGTGAAGATGGCATGGTTAGTTTGGCTTTGATTTGTTCTTTTACTCGGATGAGAAAACATCTTAATCTGGACGATGTAAAGCCGGATGAAGTCCCCGAAGATACTGTGAAAGCTGTTGCTGAAACTTTGAGGAAATCAGAATCACTTAAGATCTCCGAGGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCTGAAACCAGAAGAGGTAATTGAGCAGGTGGACATCAGAACAATAGCTGCATCACCATTTGAACATGATGTGAAGCGAGAAGATATAGAGGCATTCTTCGGTCAATCTGCCAAGGTTAATAGTGTCAGGCTTCCTCGTCATGTTGGAGACAGAAGATTCTTCTGTGGCACTGCTCTCGTCGAGTTTGCAGAAGAACAAGATGTTGAAAAAGTTTTGGGGCAAAACTTGGTCTATGCTGGAGCCGAGTTAGAATTGAAGTTAAAGAAAGACTTTGATGCAGAGAGAGCAAAGGAGTTAGAAGAGTACAAAAAATCTGGTGCCCATATGGGTTCAAATCACCCGAATAACTCAAATGCTGACACAGGCTACCCCAAGGGCTTAATTATTTCCTTCAAGCTAAAACGCTTTTCAGATGATGTTTCTCTGGGACAAAATGGTGCTCATCAAGAAGCCAATGGCGACAGTTGTGTCTCTGACGAAGAGGAACAAAAACCCTCAGAAGGTGTTGTTGAGGAGAGTAATGAACAAAAGGTATCAGATAATACTGACAATGATAAAGAACACCAAGAGGTCAGTGAAGGAAATGAAGCTAAAGGTGAAGAGAAGATTCAAGAAACTGAAGTAAAACTTTCAGCCAAAGCTTGCAAGGACAACATGGATGTTGTGTTACGTGAGGATTTGAAGGTTGTCTTTGAGAAGTTTGGTTCTGTGAAGTACGTTGATTTCAAGATTGGAGAAGAGTCAGGATACATCCGGTTTGAAGAACCTGAAGCTTCTCAAAAAGCTCGTGCTGCTGCGGTTCTTGCTGAAAAGGGGGGTTTGGCTGTGAAGAATTTTATTGCTACTCTAGATCCAGTTTCTGGCGATGCTGAAAGGGAATACTGGAGCCTTCTCCGTGGTAATCAAGAAAAGCGCCGAGACAATAACAACACCCGAAGAAGGGGAGGAGGAAGGCACGGTAGAGGAGGGAAACATGCCCGCTCTAGAGATAATGGATATGCAAGGGGTCGCCCAAATAAAGCTCGGAGAGTTGGGGCGGCTTAA 1353 0.4339 MATPSLDEETAKKVIRQVEFYFSDSNLPMDNFLKKCIGESEDGMVSLALICSFTRMRKHLNLDDVKPDEVPEDTVKAVAETLRKSESLKISEDGKKVGRTTELLKPEEVIEQVDIRTIAASPFEHDVKREDIEAFFGQSAKVNSVRLPRHVGDRRFFCGTALVEFAEEQDVEKVLGQNLVYAGAELELKLKKDFDAERAKELEEYKKSGAHMGSNHPNNSNADTGYPKGLIISFKLKRFSDDVSLGQNGAHQEANGDSCVSDEEEQKPSEGVVEESNEQKVSDNTDNDKEHQEVSEGNEAKGEEKIQETEVKLSAKACKDNMDVVLREDLKVVFEKFGSVKYVDFKIGEESGYIRFEEPEASQKARAAAVLAEKGGLAVKNFIATLDPVSGDAEREYWSLLRGNQEKRRDNNNTRRRGGGRHGRGGKHARSRDNGYARGRPNKARRVGAA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0515 450 MobiDBLite consensus disorder prediction 246 307 - -
Lele28g0515 450 Pfam RNA binding motif 325 417 IPR014886 GO:0003723
Lele28g0515 450 SUPERFAMILY RNA-binding domain, RBD 108 193 IPR035979 GO:0003676
Lele28g0515 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Lele28g0515 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 175 IPR000504 GO:0003723
Lele28g0515 450 PANTHER LUPUS LA PROTEIN-RELATED 10 299 IPR045180 -
Lele28g0515 450 SUPERFAMILY RNA-binding domain, RBD 327 409 IPR035979 GO:0003676
Lele28g0515 450 CDD LA_like_plant 10 99 - -
Lele28g0515 450 MobiDBLite consensus disorder prediction 403 417 - -
Lele28g0515 450 SUPERFAMILY "Winged helix" DNA-binding domain 6 102 IPR036390 -
Lele28g0515 450 Gene3D - 296 417 IPR012677 -
Lele28g0515 450 Pfam La domain 14 84 IPR006630 -
Lele28g0515 450 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lele28g0515 450 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lele28g0515 450 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lele28g0515 450 FunFam La protein 2 6 106 - -
Lele28g0515 450 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lele28g0515 450 SMART rrm1_1 321 380 IPR000504 GO:0003723
Lele28g0515 450 Gene3D - 6 106 IPR036388 -
Lele28g0515 450 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Lele28g0515 450 MobiDBLite consensus disorder prediction 403 450 - -
Lele28g0515 450 MobiDBLite consensus disorder prediction 257 307 - -
Lele28g0515 450 ProSiteProfiles xRRM domain profile. 304 430 IPR014886 GO:0003723
Lele28g0515 450 Gene3D - 109 207 IPR012677 -
Lele28g0515 450 SMART la 8 100 IPR006630 -
Lele28g0515 450 CDD RRM2_La_like 323 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0515 Lele-ChrLele28 3271550 3275088 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0536 01 3207786 3209958 Lele28g0515 28 3271550 3275088 CCT
Lele02g0531 02 3194282 3201667 Lele28g0515 28 3271550 3275088 CCT
Lele03g0545 03 3239231 3241419 Lele28g0515 28 3271550 3275088 CCT
Lele04g0550 04 3334253 3336560 Lele28g0515 28 3271550 3275088 CCT
Lele25g0504 25 3177991 3181930 Lele28g0515 28 3271550 3275088 hybridization
Lele26g0522 26 3301438 3313126 Lele28g0515 28 3271550 3275088 hybridization