Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0513 ATGGAAGGTGACAAGACAACCCCAGCTCCATCAGATGGGTTCAGTGACGGTGTTCAGAAAATTAGAGCCCTGCATGGGCGGACTAGTGGTCCTACCAGGCGTTCTACAAAAGGACAGTGGACTCCTGAAGAGGATGAGATCTTGCGGAAGGCAGTTCAACGTTTTAAAGGAAAGAATTGGAAGAAAATAGCGGAATGTTTCAAGGATAGAACAGATGTACAATGCCTACATAGGTGGCAGAAAGTCTTAAATCCTGAACTGGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATAATTGATTTGGTGAACAAATATGGGCCAAAAAAATGGTCTACTATTGCACAGCACTTACCTGGACGAATTGGTAAGCAATGCAGAGAAAGGTGGCATAATCATCTCAATCCTGCTATAAACAAAGAAGCATGGACCCAAGAAGAGGAGTTAGCTCTAATTAGTGCACATCAAATTTATGGGAACAGATGGGCCGAATTGACAAAGTTCTTGCCTGGAAGGACGGACAATGCTATAAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCGTCAGGTTTGCTTATACCCCATGTTGGACATCCAAATCAACCCATGGTTTCTGCATCTTCGAGATTCCTTTGTAGTGGAGATGATAGTCAGAAGGGAATAGGAGAGGAAGTTTCAGAGTGTGGCCAAGAGTCTGCTAGTGCTAGTCGTCTACCGGTTTCCCAAGAAATGACAAGGGTTGGTTTATATGCTAGAGAAGAAACTAAGCCAAATGAATATTCTAGTCTAGGAAAGGAGCAAAGTCCTAGTCAAGCATCATGTTCAGAGCCATATTATATATCATTGGATGATGTTACCATACCCAACTCGGACATTGCTCGAGAAGAGGCTTCCTCTTCTCGATTCACTGAGCAAAAATACTCACACAAGGCTGGAAATTCTGCAGGCATGGATAATGGATTCCAATTACATGGTTTACCCAGTATTTCATCACTAGACTTGGGTCAGGAATTATCACTTTTGCAGGGAGATTGTATAGTTTCTAACGAAAACCATGACATTGTGAATGCTCAATTTCATACTTCAGTGGGGTTAGGTATTGCAACATCTATGGCGCCCACATCTATGGATTCTTCTAAACCAGAGGACATGTTGATAGCTGATGAAGAATGTTGTAGAATTCTATTTTCAGATGCAATGAATAATGGAACCTTTTCATCTGGAGATCATAGCAGAGGTGTTGATATGGTTTTGTCTGCATGCACTTCAAATCCTTACCAATCATCTGAAATCCATATATCTGATGCTGGAACCTCAGCTGCACTCAAAACTAGTCCAACAAGATCTAATAATTTAATAGAATCTTCATGCGACCAATCTTTCCCAATTGTTGCTTCATCGCTTTCAGTTAATGATGGTAGAGTATCGTACACTGCTGAAGCTGCTCGAATATATGGAGGTGATGATCAGCAATTTGCCTCCAACGTACATGACAGCTTCATTTTCCCCAACGACTCATCCATCTCACCTTGCCTTGATATTATAGATAGTGCTGAAATTCACGATGGACCCAATGTTGTGAATGATGCATTAAGATTGGTCCCTGTAAATAATTTTACTTGTGCATCGAATGTCAATCAAACATGTAATCCAACAACGGATGAAAAGGCAGATGTGCAAACAGAACCGGAGGACACAGGATCTCTATGTTATGAACCTCCTCGATTTCCAAGCTTGGATATTCCTTTCTTCAGCTGTGATCTTATACAACATGGAGGGGATATGCAGCAAGATTTCAGTCCGCTGGGTATCCGCCGGCTTATGATGTCTTCAGTGAACAGTCCAACTCCCTTGAGGTTGTGGGACTCGCCTTCTCGTGATGATAGTCCAGATGCTTTGTTGAGAAGTGCTGCAAAAACTTTCACAAGTACACCATCCATTTTAAAGAAGCGACGCCGGGACTTGTTATCACCATTATCAGATAAGAGAATTGAGAAGAAACTTGAGACTGACATGACATCCACTTTGACCACACATTTTTCACGTTTGGATGTCATGTTTGATGACAATGACTTGAGGGCTGCAAATATGCTTCCTCCATCTTCAATACAGGAAAATAAAAATGGAGCCTCTGATGATGATAAAGAAAATTGTGAGCCAGCTTTGAGAGGAGAACATGTAGAGGGAGAAAAAGAATATACCATTTTGAGGGGCAAAGAGTCAGAAAAAGATACCGGTAATAATAACTCTCAGGACGTTGATTCGAAGATGGAGACTGATGCGGACGCTTGTGCTGCTGCTGAGATTGTGCAACAACCTTTCGAAGTCTTAATCGAACGTGATATGAATGACCTGCTATTGTATTCTCCAAATCAAATTCGTTTTAGCGCGGATAAAATTCACATTGCAAGCGTTAGAACTCCCAAAAACCTGAACAACAGAAGCTTGGAAGCAGCCCCGAATCAGAATATTGCTCCAAAATCATTTCATGGAAATCCCTACACGAGTGATTGCTCCCTATCTGTTCGTGTAAAGGCGCATGAAATTTCTTCAGTTCGACCGTTTCATTGTCCATCTGCCCCTGGGGAGAATTCTGGTGATCATACTGGGAATGATGCTGGTTTCGAAACATTCAACATATTTGGTGGAACACCTTTTAGAAGAAGCATTGAATCACCTTCAGCATGGAAGTCCCCTTGGTTCAGTAACACTTTTCTGACTAGCCCCAGAATTGATACTGAAATATCAATTGAGGATTTTGGGTATTTAATGAGCCCTGGTGATAGAAGCTATGATGCAATTGGGTGGATGAAGCAGGTCAAGGAACAAACTGCGGCTGCATATGCCAATGTTGAGGAGATTCTGGAAATTGACACTCCCAAAGCAAAAGATGCATCTGGAAATGCTGGGGATGGGGCCCAAGAAAGAAGAAATCCTCATAACCAGCCTAGCAGTCATTGTCAGTTAGCTTCTTCAAATGCTTTGATGGAGCGACGGGTACTTGACTTCAGTGAATGTGGAACACCTGGAAATGGGAACAATAAATCTTTCAGCTATAAGAGTTAA 3087 0.4176 MEGDKTTPAPSDGFSDGVQKIRALHGRTSGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALISAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLIPHVGHPNQPMVSASSRFLCSGDDSQKGIGEEVSECGQESASASRLPVSQEMTRVGLYAREETKPNEYSSLGKEQSPSQASCSEPYYISLDDVTIPNSDIAREEASSSRFTEQKYSHKAGNSAGMDNGFQLHGLPSISSLDLGQELSLLQGDCIVSNENHDIVNAQFHTSVGLGIATSMAPTSMDSSKPEDMLIADEECCRILFSDAMNNGTFSSGDHSRGVDMVLSACTSNPYQSSEIHISDAGTSAALKTSPTRSNNLIESSCDQSFPIVASSLSVNDGRVSYTAEAARIYGGDDQQFASNVHDSFIFPNDSSISPCLDIIDSAEIHDGPNVVNDALRLVPVNNFTCASNVNQTCNPTTDEKADVQTEPEDTGSLCYEPPRFPSLDIPFFSCDLIQHGGDMQQDFSPLGIRRLMMSSVNSPTPLRLWDSPSRDDSPDALLRSAAKTFTSTPSILKKRRRDLLSPLSDKRIEKKLETDMTSTLTTHFSRLDVMFDDNDLRAANMLPPSSIQENKNGASDDDKENCEPALRGEHVEGEKEYTILRGKESEKDTGNNNSQDVDSKMETDADACAAAEIVQQPFEVLIERDMNDLLLYSPNQIRFSADKIHIASVRTPKNLNNRSLEAAPNQNIAPKSFHGNPYTSDCSLSVRVKAHEISSVRPFHCPSAPGENSGDHTGNDAGFETFNIFGGTPFRRSIESPSAWKSPWFSNTFLTSPRIDTEISIEDFGYLMSPGDRSYDAIGWMKQVKEQTAAAYANVEEILEIDTPKAKDASGNAGDGAQERRNPHNQPSSHCQLASSNALMERRVLDFSECGTPGNGNNKSFSYKS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0513 1028 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Lele28g0513 1028 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Lele28g0513 1028 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Lele28g0513 1028 Gene3D - 89 140 - -
Lele28g0513 1028 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Lele28g0513 1028 MobiDBLite consensus disorder prediction 966 998 - -
Lele28g0513 1028 Gene3D - 142 197 - -
Lele28g0513 1028 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Lele28g0513 1028 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Lele28g0513 1028 Gene3D - 36 88 - -
Lele28g0513 1028 PANTHER MYB PROTEIN-RELATED 37 110 - -
Lele28g0513 1028 SMART sant 140 188 IPR001005 -
Lele28g0513 1028 SMART sant 88 137 IPR001005 -
Lele28g0513 1028 SMART sant 36 85 IPR001005 -
Lele28g0513 1028 MobiDBLite consensus disorder prediction 982 998 - -
Lele28g0513 1028 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Lele28g0513 1028 MobiDBLite consensus disorder prediction 258 279 - -
Lele28g0513 1028 CDD SANT 143 183 IPR001005 -
Lele28g0513 1028 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Lele28g0513 1028 CDD SANT 40 83 IPR001005 -
Lele28g0513 1028 FunFam Transcriptional activator Myb isoform A 36 88 - -
Lele28g0513 1028 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Lele28g0513 1028 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Lele28g0513 1028 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Lele28g0513 1028 MobiDBLite consensus disorder prediction 1 42 - -
Lele28g0513 1028 FunFam Transcriptional activator Myb isoform A 89 141 - -
Lele28g0513 1028 MobiDBLite consensus disorder prediction 734 762 - -
Lele28g0513 1028 FunFam Transcription factor MYB3R-2 142 208 - -
Lele28g0513 1028 CDD SANT 91 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0513 Lele-ChrLele28 3256809 3261618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0513 21 1017 MYB Transcription Factor Family AT4G32730 43.933 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g0513 Myb_DNA-binding 3e-15 CL0123