Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0495 ATGCATGTAAGCACAGCCATGGTACTAGTGGTGCTCTCCATGATGTTTACGGTAATACTTGTACTGATTGTTTATATAAAATTCTGTCGAACCAGTTCTTTCGAGATTCTGAACCAAAGCATCCACCCCCAGAACTTGGCTCGATCAGAGCAGTCCAAGTTTTATGGGGTTGACAAGCAAGTAATCAAAACACTCCCCGTGTTCAAGGTTTCTTTACTCAAAGGATCAAAAGAAGGCCTAGCATGCGTTGTTTGCCTGTCGAGATTTGAAAACAGCGAAACTCTTAGGTTGCTCCCAAAGTGCAAGCACTCTTTCCACATGAATTGCATAGACATGTGGCTTGAAGGTCACTCTACATGCCCTCTCTGTAGGTGCAGGGTAGACCCAGGGCATATCAAGAGCTTCACTTCTTCAATCAGCTCAAGGTTCCTGAGAGTCCCTTCCAATTTAACAGAGGAACCAGATCTTGAAATCTTTGTGCAGAGGGCGCAATCCCGTCAAGGGTCATCGAGAATCAACTCTGAGAGATGCTTATGGAATGTGGAAGAGGAGGGCAAGAAGGAAGAAGAACCGCTCATTGATAATGGTGGAAATCGGGAAATTCTGCACAAGTTCAATCACAGAATAGTTATCTCTGGTTTTGTTACGAGGAGTAGGTGGAGTGATCTTAGTGCGACGGATTTGCTATTCTTAAACTCGGAAATGCTCAGTGTTATGTCAAGCACAAGATTCCTTGCTTCAGAATCCACCAACAGGGAATCGTCACGAAGTATTTCAAACCTTTCATCTGCATCCAACGAGGAAGAAAACTCGTACAACCCACTGAATTGGGGTGGTAAGAGATCAAAGTCTGAGATTACAATTGTTCCAAGGTTGAAGGAAATCAACAGAATGAAGAACTTAGCAGCATGTGGCGACAACAATGGGAGTAAGGAGAGATCATGGAGGATATGGTGGCCAATCGCGAGGCGAACCGTGCTAGGATTTTCCAGACAAGAAAGAAGTTCAACGGAGTTAGAATCAAATGAATTAGATTCAAATGTGTAA 1047 0.4374 MHVSTAMVLVVLSMMFTVILVLIVYIKFCRTSSFEILNQSIHPQNLARSEQSKFYGVDKQVIKTLPVFKVSLLKGSKEGLACVVCLSRFENSETLRLLPKCKHSFHMNCIDMWLEGHSTCPLCRCRVDPGHIKSFTSSISSRFLRVPSNLTEEPDLEIFVQRAQSRQGSSRINSERCLWNVEEEGKKEEEPLIDNGGNREILHKFNHRIVISGFVTRSRWSDLSATDLLFLNSEMLSVMSSTRFLASESTNRESSRSISNLSSASNEEENSYNPLNWGGKRSKSEITIVPRLKEINRMKNLAACGDNNGSKERSWRIWWPIARRTVLGFSRQERSSTELESNELDSNV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0495 348 MobiDBLite consensus disorder prediction 255 276 - -
Lele28g0495 348 FunFam E3 ubiquitin-protein ligase ATL6 45 130 - -
Lele28g0495 348 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Lele28g0495 348 Pfam Ring finger domain 81 124 IPR001841 -
Lele28g0495 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 130 IPR013083 -
Lele28g0495 348 CDD RING-H2_PA-TM-RING 82 124 - -
Lele28g0495 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 4 333 - -
Lele28g0495 348 SMART ring_2 82 123 IPR001841 -
Lele28g0495 348 SUPERFAMILY RING/U-box 63 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0495 Lele-ChrLele28 3160740 3161786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0495 4 336 C3H Transcription Factor Family AT2G20030 38.352 2.75e-64 207