Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0487 ATGGAAGCACCCGAGTATTTCCAGGGCGGCTTTTGCTCCCAATTCGCCTCCTCCGATGCCAAGGCCGACCATTTCATCGTGGAGGACCTCCTCGACTTCTCCCAAGACGACGACGCCATCATCACCGACCCCACCTTCGGCTCTCTTCCCGCCGATTCTTCCATTCGAATTAACTCCGTTCGTAGCTCCAATTCCTCTTATTTCTCAGGCTGCCAACCCAATTTCAACCCTCACATTCCCTCTCGAAATTTACCCGACCCATATTTCTCCAGCGACCTCTGCGTCCCGAGCGATGATATGGCAGAGCTGGAATGGCTCTCGAACATTGGGGAGGAATCATTTTCGAGCGAGGACCTGCAGAAACTGGAGCTGATATCGGGCATAAAAGCCCGAAACGAGGAAGCATCAGAAAGCCTTGAGTTGCAGCACCACGAAGAAACCAACCGGAGCAACGTCATATTCAACCGCCAAGTGTCGGTTCCAGCGAAGGCTCGCAGCAAGAGATCTCGCGGTCCCCCATGCAACTGGACCTCTAGCCTCCTAGTCCTTTCTCCCACATCATCCTCCTCCGAACCGGACGTCGTCCTTCCGATCCAGCCCGGAAAGAAGCCGGGGAAGTCGGCAACCAGGAAAAAGGAGAACGGCGAGGAAGGGTCCGGGGAGGGGCGGAAATGCCTGCACTGTGCGACGGATAAGACGCCGCAATGGAGGACGGGACCCATGGGCCCGAAGACGCTGTGCAATGCTTGTGGGGTGAGGTACAAGTCGGGGAGACTGGTGCCGGAGTACAGGCCGGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCGAACTCGCACCGGAAGGTGCTGGAGCTACGAAGACAGAAGGAGGGGAAGAGGGCCCAGAAGCAGCAGCAGCTGTACCTGCAACATCAAAACGTGATGTTCGATGTGTCCAACGGCGACGATTACTTGATCCACCAACACGTGGGGCCAGATATCAGGCGGCTCATCTAG 999 0.5706 MEAPEYFQGGFCSQFASSDAKADHFIVEDLLDFSQDDDAIITDPTFGSLPADSSIRINSVRSSNSSYFSGCQPNFNPHIPSRNLPDPYFSSDLCVPSDDMAELEWLSNIGEESFSSEDLQKLELISGIKARNEEASESLELQHHEETNRSNVIFNRQVSVPAKARSKRSRGPPCNWTSSLLVLSPTSSSSEPDVVLPIQPGKKPGKSATRKKENGEEGSGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEGKRAQKQQQLYLQHQNVMFDVSNGDDYLIHQHVGPDIRRLI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0487 332 PIRSF Txn_fac_GATA_plant 10 314 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele28g0487 332 MobiDBLite consensus disorder prediction 184 223 - -
Lele28g0487 332 FunFam GATA transcription factor 214 301 - -
Lele28g0487 332 Gene3D - 218 269 IPR013088 GO:0006355|GO:0008270
Lele28g0487 332 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
Lele28g0487 332 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Lele28g0487 332 MobiDBLite consensus disorder prediction 206 223 - -
Lele28g0487 332 PANTHER GATA TRANSCRIPTION FACTOR 17 296 - -
Lele28g0487 332 SMART GATA_3 219 269 IPR000679 GO:0006355|GO:0043565
Lele28g0487 332 CDD ZnF_GATA 224 271 IPR000679 GO:0006355|GO:0043565
Lele28g0487 332 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Lele28g0487 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0487 Lele-ChrLele28 3124821 3126128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0487 25 332 C2C2-Gata Transcription Factor Family AT5G25830 51.642 1.38e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele28g0487 GATA 3e-15 CL0167