Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0484 ATGGCTCAAACTGAATCAAAGTGGTGCATCACGTTTCTGTGTGTCCTCATCATGTCGATGGCGATGAACTTTGTGACGTCCCATGGGAAAGAAGAAGGCGAGCTTCTGTTATCGTTCAAGGCTTCCAGTAACGACCCACTTCACCATCTCTCAAACTGGGTCAATTCCTCTTCTGCTAGTATCTGCCACTGGAATGGTGTTACCTGCGACAGTAACTCCCATGTTCGCGCCATCAACCTCTCCGCCAAAAACCTCTCCTCCAATAATATTTCCTCCTTCTCCTCCATATTTCAACTTCCACACGTTGAACACATTGACCTCTCCGACAACCAGCTCTCGGGGGGAATCTCTCTCTCTCTCTCTTCGCTTGTCTATCTCAATCTTAGCAACAACAACTTCACGGGTCCTGTCCCATTATCGTTTTCCCGTATCCAAATTCTGGATCTCTCGAACAACATGTTTTCCGGCGAAATATCCCCTCAAATTGGATCACTTACGAGTCTGACGTATGTTGATCTGGGAGGGAATGTTTTGGTGGGAAAGATTCCCGATTCTATCACTAACATGACAGGTTTAGAGTACTTGACCCTGGCTTCCAACCAGCTCGTGGGCGAAATCCCTCCAAAAATTGGCCTTATGAAGAGCTTGAAGTGGATATATTTCGGGTACAACAATCTCTCGGGTGAGATTCCAGAGGGAATCGGAGAACTGGCGAATTTGAATCATCTTGATCTTGTTTACAACAACCTCAGGGGACACATTCCCGGCTCTCTTGGAAACCTCACTAATCTTGAGTATCTTTTTCTCTACCAAAACAAGCTGACAGGTCGAATTTCTCCGTCAATTTTTGAGCTTAGAAAGCTTGTTTCGCTCGATCTCAGTGACAATTTTCTGTCTGGTGAGATTCCCGAGCTCTTGATTCAGCTTCAGAGACTAGAGATTCTACACCTTTTCTCCAACAAGTTAACGGGCAAGATTCCAAACGCTATAACCTCTCTGCCTCGGCTCCAAGTCCTTCAGCTATGGTCTAACGGATTAACGGGTGAGATTCCAGAAGATTTGGGAAAGCATCATAACCTCACTGTTCTGGACCTTTCCACCAACAAACTTTCTGGGAAAATCCCAGATAGTTTATGTCACTCGGGCGCTCTTTACAAGCTTATCCTTTTCTCCAACTCTCTTCAAGGGGAAATACAGGATAGCTTAACCTCTTGCACAAGCTTGCGCCGAGTTCGTCTTCAGAACAACAAGTTTTCCGGTGAATTACCCTCCCGACTAACTCAACTGTCACAGGTATATTTATTGGACATCTCCGGTAACCAACTCTCCGGCAGGATAGATGATAGGCCCTGGAATATGTCGTCGCTTCAAATGTTGAATTTGGGTAACAACAATTTCTCTGGGGGGTTACCGACCACTTTTGGTAGTACAAAATTGGAGAAACTAGACTTATCCGAAAATCGATTTTCTGGTTATATTCCACGTGGGTTTGGAAGCTTATCGGAGCTGATGCAATTTAATCTGAGCAATAACAAGCTATATGGTGAAATACCACAAGAGCTCACTTTCTGCAGGAAGCTAGTGCTTTTAGATGTCAGCCACAATAAACTCACCGGTCAAATTCCGACGAGACTCGGCGACATGCCGGTTCTGAGCTTGCTGGATTTGTCGGATAACCAATTGTGGGGTCAAATTCCAGAGAATTTAGGCAGAGTGGAATCTCTTGTGCAGGTAAACATATCCCACAACCATTTTCACGGACATTTACCGGCCACTGGAGCTTTCCTCGCCATTAATGCCAGCGCGGTCACTGGCAACGACCTATGTGGCGGTTCCGGTGACACTTCAAGCGGGTTGCCGACCTGCAAAAAAAGCGATAAGAATCCATGGTTTGTCGTACTGTGGTTTGTAGTGGGACTCGCGGGGTTTGCATTAGCGGCCTTTCTAGTTACTTGCTCGCGTAGAAGAAAGAGTTTGGAGCTGAAGAGAGTGGAAGGCGAAGATGGGACCTGGGAGATTCTATTTTTCCACTCCAAGTTTGCCAAATCGATAACAATGGACGATGTTTTATCGTCAGCTGAAGCAGGAAACGTGATCTCCAAAGGGAAGAACTGGGTTTCATACGAAGGGAAGTGCATGGCAAGTGGCATCCAATTCGAGGTGAAGGAAATCAGAGACTTAAATTCAGTTCCTTTGAGTTTCTGGGAAGACATGGTGGAGTTGGGTAAGGTGCGGCATCCAAACATTTTTAAATTGACGGCACTATGCCGTTGGGGTAAAGGAGCATTTTTAGTATACGGGGATGCAGAAGGAGAGAGTTTAAGTCAAGTTGTGAGGAATTTGAGCTGGGAAAGGCGACGGAAAATCGCCGTCGGGATTGCAAAAGCACTAAAGTTTCTGCATGCTCAATGCTCATCAGTTATTTTGGTTGGTGAGATGTCGCCGGAAAGCATTTTCATCGACAGAAACGACATCCCACGCTTGAAGTTGAGCCCTCCAGCATTGGTTAAGGGTTGCATTTCTTCTCCTTACGTTGCCTCAGAAGCAAGGAATGGGACGGAGGTGACAGAGAAGAGCGACGTATATGGATTCGGTGTTATTCTGATGGAGTTGTTGACGGGAAGAAGTGCGGGTGAGGAGGAGGGGAGCATAGTGGAGTGGGCCCGATATTGCTATTCGGATTGTCATTGGGAAACGTGGGTCGACCTGACAATGAGGGGTGGGACGCATGACGACGTCGTAGAGACGATGAACCTGGCACTGCGCTGCACCGCCATGGATCCCACAGCAAGGCCATGCGCACGCGACGTCTTCAAATCCCTCTCTGCGGTGACCCGCACACACCCTGGTCTCTGTGTTTCTGCACTCCAACCATGA 2877 0.4713 MAQTESKWCITFLCVLIMSMAMNFVTSHGKEEGELLLSFKASSNDPLHHLSNWVNSSSASICHWNGVTCDSNSHVRAINLSAKNLSSNNISSFSSIFQLPHVEHIDLSDNQLSGGISLSLSSLVYLNLSNNNFTGPVPLSFSRIQILDLSNNMFSGEISPQIGSLTSLTYVDLGGNVLVGKIPDSITNMTGLEYLTLASNQLVGEIPPKIGLMKSLKWIYFGYNNLSGEIPEGIGELANLNHLDLVYNNLRGHIPGSLGNLTNLEYLFLYQNKLTGRISPSIFELRKLVSLDLSDNFLSGEIPELLIQLQRLEILHLFSNKLTGKIPNAITSLPRLQVLQLWSNGLTGEIPEDLGKHHNLTVLDLSTNKLSGKIPDSLCHSGALYKLILFSNSLQGEIQDSLTSCTSLRRVRLQNNKFSGELPSRLTQLSQVYLLDISGNQLSGRIDDRPWNMSSLQMLNLGNNNFSGGLPTTFGSTKLEKLDLSENRFSGYIPRGFGSLSELMQFNLSNNKLYGEIPQELTFCRKLVLLDVSHNKLTGQIPTRLGDMPVLSLLDLSDNQLWGQIPENLGRVESLVQVNISHNHFHGHLPATGAFLAINASAVTGNDLCGGSGDTSSGLPTCKKSDKNPWFVVLWFVVGLAGFALAAFLVTCSRRRKSLELKRVEGEDGTWEILFFHSKFAKSITMDDVLSSAEAGNVISKGKNWVSYEGKCMASGIQFEVKEIRDLNSVPLSFWEDMVELGKVRHPNIFKLTALCRWGKGAFLVYGDAEGESLSQVVRNLSWERRRKIAVGIAKALKFLHAQCSSVILVGEMSPESIFIDRNDIPRLKLSPPALVKGCISSPYVASEARNGTEVTEKSDVYGFGVILMELLTGRSAGEEEGSIVEWARYCYSDCHWETWVDLTMRGGTHDDVVETMNLALRCTAMDPTARPCARDVFKSLSAVTRTHPGLCVSALQP 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0484 958 Gene3D Ribonuclease Inhibitor 373 623 IPR032675 -
Lele28g0484 958 ProSiteProfiles Leucine-rich repeat profile. 79 100 IPR001611 GO:0005515
Lele28g0484 958 SUPERFAMILY Protein kinase-like (PK-like) 687 941 IPR011009 -
Lele28g0484 958 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 317 618 - -
Lele28g0484 958 Pfam Leucine rich repeat 334 394 IPR001611 GO:0005515
Lele28g0484 958 Pfam Leucine rich repeat 478 537 IPR001611 GO:0005515
Lele28g0484 958 Gene3D Ribonuclease Inhibitor 31 141 IPR032675 -
Lele28g0484 958 Gene3D Phosphorylase Kinase; domain 1 672 767 - -
Lele28g0484 958 Gene3D Ribonuclease Inhibitor 142 231 IPR032675 -
Lele28g0484 958 Gene3D Ribonuclease Inhibitor 232 372 IPR032675 -
Lele28g0484 958 ProSiteProfiles Protein kinase domain profile. 693 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0484 958 ProSiteProfiles Leucine-rich repeat profile. 359 381 IPR001611 GO:0005515
Lele28g0484 958 FunFam Leucine-rich repeat receptor protein kinase EMS1 232 316 - -
Lele28g0484 958 Pfam Protein kinase domain 734 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0484 958 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 657 768 - -
Lele28g0484 958 SUPERFAMILY RNI-like 79 377 - -
Lele28g0484 958 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Lele28g0484 958 Gene3D Transferase(Phosphotransferase) domain 1 770 950 - -
Lele28g0484 958 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 386 942 - -
Lele28g0484 958 SUPERFAMILY L domain-like 331 591 - -
Lele28g0484 958 SMART LRR_typ_2 500 524 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 237 260 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 453 476 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 309 332 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 120 143 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 477 499 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 548 572 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 261 285 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 358 381 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 189 213 IPR003591 -
Lele28g0484 958 SMART LRR_typ_2 333 357 IPR003591 -
Lele28g0484 958 FunFam Leucine-rich repeat receptor protein kinase EMS1 139 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0484 Lele-ChrLele28 3104800 3107775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0484 1 941 Receptor kinase-like Gene Family AT2G25790 51.506 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Lele28g0484 Pkinase 1e-12 CL0016