Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0470 ATGGCGATTGCAGCAGAGACACAGCCTCAGCCTCCATCTCATGACAAGGTAGTCCATAATACAATATGCCATGGTACTTTTGATTCTTCTATGGAATGCAATGATTGTAATGTTCCACTTGGAAATAGAGAAAGATCAAAGATATCTGAAATTGTCAATGCGATTCTGGAACCTCGGGTTATTAACAAAGAGCGTAAAGAATTCGTGAATCGTTATCGTTGTCGAAGACGTCAAACTTCTTCTGAGGCTTCTGCTGTGGAGAACAGAAGGTGGACCCTCAACGACTTTGATATTGGAAAGCCTCTTGGAAGGGGAAAATTCGGTCATGTCTATTTGGCCAGAGAAAAGAGAAGCCAATTGCAACAGTCCCAAGTTGAGCATCAGCTTAGGCGAGAAGTTGAAATCCAGAGTCATTTGCGACATCCCAACATTTTACGCCTTTATGGATACTTTTATGATCAGAAACGAGTTTATTTGATTTTAGAGTATGCAACCAAAGGTGAACTTTACAAGGAATTACAGAAATGCAAATATTTCAGTGAAAGACGGGCTGCTACTTATGTTGCTTCCTTGGCCCGAGCCCTCATATATTGCCATGGAAAGCATGTAATACATAGGGACATCAAACCTGAGAACCTTCTTGTTGGCGCCCAGGGTGAACTGAAAATTGCAGACTTTGGGTGGTCGGTGCACACATTTAACCGCAGGCGGACCATGTGTGGAACACTAGATTATCTTCCTCCTGAGATGGTGGAGAGCGTAGAACATGATGCAAGCGTTGATATATGGAGCCTTGGTATCCTTTTTTATGAGTTTCTCTATGGAGTCCCTCCTTTTGAGGCTAAAGAACATTCTGAGACATACAGAAGGCAAGCATCAGAATCTAAACTAGCATTTAATAATCCAAGTGGATCTCAAGTTCCCGCCCAAACCAATTGTGTCCTCTGCTGCAAAGGACCTCATCAGTCAGATGCTGGTGAAGGATTCGGTTCAACGCCTACCATTGCACAAGCTTCTGGAACATCCTTGGATTTTTCAGAACGCAGAGCCCTCTGGTGTATACAAGTGCTAGTTTTTTCATTCCCAATATGGCAGCTTTCTGGATCCGCAAAGTATGTGATGTAA 1125 0.4302 MAIAAETQPQPPSHDKVVHNTICHGTFDSSMECNDCNVPLGNRERSKISEIVNAILEPRVINKERKEFVNRYRCRRRQTSSEASAVENRRWTLNDFDIGKPLGRGKFGHVYLAREKRSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYATKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGILFYEFLYGVPPFEAKEHSETYRRQASESKLAFNNPSGSQVPAQTNCVLCCKGPHQSDAGEGFGSTPTIAQASGTSLDFSERRALWCIQVLVFSFPIWQLSGSAKYVM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0470 374 Gene3D Phosphorylase Kinase; domain 1 83 167 - -
Lele28g0470 374 FunFam Aurora kinase A 88 167 - -
Lele28g0470 374 FunFam Aurora kinase B 167 255 - -
Lele28g0470 374 Pfam Protein kinase domain 98 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0470 374 SMART serkin_6 96 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0470 374 CDD STKc_Aurora 95 290 - -
Lele28g0470 374 ProSiteProfiles Protein kinase domain profile. 96 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0470 374 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 78 300 IPR030616 GO:0004672
Lele28g0470 374 Gene3D Transferase(Phosphotransferase) domain 1 168 318 - -
Lele28g0470 374 SUPERFAMILY Protein kinase-like (PK-like) 84 294 IPR011009 -
Lele28g0470 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0470 Lele-ChrLele28 3024041 3026567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0470 90 288 AGC Kinase Gene Family AT1G48490 32.917 4.31e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Lele28g0470 Pkinase 2.5e-56 CL0016