Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0448 ATGAACTGTGACATATCAACGGCAGATAATGAACACCCATTGGAGCTGGGGAATCGAAATGCAGAACTGCAGGGCACGTGTCCTCCTGGAGGAATCGCCAGCTTTAGGCATTTAGGCGTTATCACTTCAGTTTTAGTTATTTTTGCAACTTCAGAGATTGAGATACAAGCGAATAAAGCTTTTGTACTTCGTGCCAAGGGAAAAGGGCTGGGCTGTGTTGTGGTAGAACTCCAGAATTATCATCTTTTTTGGCGTGTGAAAAAAATGGGAACTGGATGGAGAAGAGCCTTTTGCACTCGTGACCCTGAGTCTACCATATCCGATAAGCAGAACCGAGGCTCGAGTCCAAGCCCCAGCCCCAGAAGCTGTGTTCGATTGGGTTTTCTCTCCGGCGGAAGCAACCCTTCCACTCCTCGCTTGCAGCAACAATCTCAAGCGGTGTCTAGTCCGAGCTTGCGTTGCCGAACAGTTTCAGAAGCAGCGAACGTGAATGAGAGCCCAAGGTTTCAAAGCAAAAATACCCCCAGGGCTACCAAGTCCCCCAAAACCAGTTCAACCTCAAATCCCACATCTCCGCGTTCTCCTTTGAAGTTATCTCTCTTCAGGAACAGCTTCAAATTCCGGAGTGGTTGTGCAATCTGTTTGAATAGCGTGAGAACGGGTCAGGGAACGGCCATTTACACTGCAGAATGTACTCACGCCTTTCACTTTCCCTGTATCGCCGATTATGTACGCAAACATGGAAGTCTCGTCTGCCCCGTCTGCAACGCTACCTGGAAAGACGTGCCTCTGCTAGCCGCACACAAGAACCATGCCACAGAATCCGCCGAAAAGAACGACATCGTTGTTGAGAAGAGCGTCGTAAAACCAAATGCCCCCCAGAAGACTAAAGAAAACTCGTCCCCAGTTTTCAGAACCAAGCTTGTTGAACCGCCGCCCCAACAATGGCCACAAAAGCAGCCAAGGCAATCTGATTCATACAGGTCCTACGACGACGATGAGCCACTTCTATCTCCCACATCCGGTGGCCAAATCATTCCAATACCTGAAGCCGACGAAAAAGCCGAAGAAGACGAAGACGACGTTGAAGAATTCCAGGGATTTTTCGCCAATGCAAAATCTTCATCCTCAATCAAATCTTACTCTGATGACCTGCAAATAAGCGAAAAAGATTCCAGGACCGTTCAGGTGAAGTTGATCCCCGAGTGTGCCGTAGTGTCAGTCTCTCGAACCCACGAGACTTACGCTTTGGTTCTGAAAGTGAAGGCTCCTCCTCCGCCACCTCCAGCGCGTTGTAGCAATAACAGTTCGACGCCGCGTCTTGGTCAGTCGAAGCGAGCTCCCATAGATCTCGTAACGGTTCTTGACGTGGGTGGAAGCATGACAGGTGCGAAGCTTCACATGCTTAAGCGAGCGATGCGTTTGGTTATTTCCTCACTCAGCCCAGCCGACAGGCTCTCCATAGTGGCTTTCTCGGCCACTTCCATGCGGCTCTTACCCTTGAGAAGAATGACGGCTCAAGGACAGCGCGTGGCTCGGCGCACCATCGATCGGCTTGTCTCTGGCCACGGCGCTTGTGTGGGAGATGCTCTCAGAAAAGCCACCAAAGTGCTCGAGGACCGTAGGGAGAGAAACCCGGTTGCCAGCGTCATGCTCCTATCGGACGGTCAGGATGAACGAGGCCAAAGCGGTAACATCAACAACCAACGAAAATCCTCGAACCACATGTCCTCCACCCGATTCGCCCACATCGAGATACCGGTTCATGCGTTCGGATTCGGGAAAAAGAGCGATTTAAGCCACGAGCCGGCCGAGGATGCATTTGCCAAGTGCATTGGCTGGTTATTGAGTGTGGTTGTACAAGACTTGAGAATTCAGCTCGGCTTCCAGTCGGGCTCATCGGCGGCTGAAATCAGCGGCATCTATTTGTGCGGCGGTCTAACCACAGCACTGAGCTCAGGCTGCGTACGGCTTGGCGACTTGTACGCCGAGGAAGAGAGGGAGTTACTGGTGGAGCTGAGAGTTCCAACGTCGGCTTTGAGGACCCACCACGTGATGACGGTACGGTGCCTGTATAAGGATCCTGCATCTCAAGAGATCGTATCCAGTAGGGAACAGGCCCTACTGGTTCCGCCACCTCAGGGCAAGCGAAGCGAACGCTTGAGGAATTTCTTCATTGCGACTCGAGCCATAGCTGAGTCCCGCCGGCTCGTTGACCACAACGACTTCACGAGCGCTCATCATTTACTGGCTTCGGCTCGCGCACTTTTGATGCAGGCCAAGTCTAGCTCGGCCGAGGAGCAGGTGCGTGCGTTGGAAGCTGAGTTGGCAGAGCTTCATTGGCGCACTAATAATTCGATGGAGCAGCAGACGATGATGCAGGAACGCAGGAGGGGCTACGAGAGGGAGATGACGAGCTTGGTGGATGATAACGGTGAGCCGCTCACGCCGACGTCGGCTTGGAGAGCTGCCGAGAAGCTGGCTAAGATGGCTCTCATGAAGAAGTCATTGAACAGGGTCAGCGAATTGCACGGCTTCGAAAACGCTAGGTTTTAA 2556 0.5243 MNCDISTADNEHPLELGNRNAELQGTCPPGGIASFRHLGVITSVLVIFATSEIEIQANKAFVLRAKGKGLGCVVVELQNYHLFWRVKKMGTGWRRAFCTRDPESTISDKQNRGSSPSPSPRSCVRLGFLSGGSNPSTPRLQQQSQAVSSPSLRCRTVSEAANVNESPRFQSKNTPRATKSPKTSSTSNPTSPRSPLKLSLFRNSFKFRSGCAICLNSVRTGQGTAIYTAECTHAFHFPCIADYVRKHGSLVCPVCNATWKDVPLLAAHKNHATESAEKNDIVVEKSVVKPNAPQKTKENSSPVFRTKLVEPPPQQWPQKQPRQSDSYRSYDDDEPLLSPTSGGQIIPIPEADEKAEEDEDDVEEFQGFFANAKSSSSIKSYSDDLQISEKDSRTVQVKLIPECAVVSVSRTHETYALVLKVKAPPPPPPARCSNNSSTPRLGQSKRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLSPADRLSIVAFSATSMRLLPLRRMTAQGQRVARRTIDRLVSGHGACVGDALRKATKVLEDRRERNPVASVMLLSDGQDERGQSGNINNQRKSSNHMSSTRFAHIEIPVHAFGFGKKSDLSHEPAEDAFAKCIGWLLSVVVQDLRIQLGFQSGSSAAEISGIYLCGGLTTALSSGCVRLGDLYAEEERELLVELRVPTSALRTHHVMTVRCLYKDPASQEIVSSREQALLVPPPQGKRSERLRNFFIATRAIAESRRLVDHNDFTSAHHLLASARALLMQAKSSSAEEQVRALEAELAELHWRTNNSMEQQTMMQERRRGYEREMTSLVDDNGEPLTPTSAWRAAEKLAKMALMKKSLNRVSELHGFENARF 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0448 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 266 IPR013083 -
Lele28g0448 851 MobiDBLite consensus disorder prediction 287 346 - -
Lele28g0448 851 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 209 846 - -
Lele28g0448 851 SUPERFAMILY vWA-like 445 596 IPR036465 -
Lele28g0448 851 CDD RING-H2 211 256 - -
Lele28g0448 851 MobiDBLite consensus disorder prediction 163 196 - -
Lele28g0448 851 ProSiteProfiles Zinc finger RING-type profile. 211 256 IPR001841 -
Lele28g0448 851 SUPERFAMILY RING/U-box 210 261 - -
Lele28g0448 851 Gene3D von Willebrand factor, type A domain 450 611 IPR036465 -
Lele28g0448 851 Coils Coil 755 782 - -
Lele28g0448 851 MobiDBLite consensus disorder prediction 424 443 - -
Lele28g0448 851 MobiDBLite consensus disorder prediction 134 153 - -
Lele28g0448 851 Pfam von Willebrand factor type A domain 451 557 IPR002035 -
Lele28g0448 851 SMART VWA_4 448 635 IPR002035 -
Lele28g0448 851 SMART ring_2 211 255 IPR001841 -
Lele28g0448 851 Pfam RING-like zinc finger 211 240 IPR001841 -
Lele28g0448 851 CDD vWA_C3HC4_type 449 620 - -
Lele28g0448 851 ProSiteProfiles VWFA domain profile. 450 600 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0448 Lele-ChrLele28 2854796 2858114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0448 209 259 C3H Transcription Factor Family AT3G14970 39.216 4.36e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0442 25 2774738 2777138 Lele28g0448 28 2854796 2858114 hybridization
Lele26g0455 26 2878623 2881024 Lele28g0448 28 2854796 2858114 hybridization