Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0445 ATGGAGTTGTCTGAACATGATTTCTTGGAGGAATTGCTAGCTCTAAAAAGAGAAGCATGGGACACAATTCCAAGTCCAAATGAAGAAAACCAGTTCTTGTTCCCCAATAATGCTTATAATAGTTTGGACTGTTTTGATCCAAATTCGCTTGCTTTTCTGCCAAATTCCTTCTCTGATCAACAGGTACCTCAAAGCTACAACAACAACTATTACAGTAGCTTCAGCGAAATCTTCAGCACATTACATGATGAATTCTCTACGTCCCAGATCATTGATTCTTCACCACCCTACATCACTCTTGATACTACAACTTCTTCACTTAGCACCCCTCCTTTTCTGGTTCAAGACGACAATAACCCCTTGTCGTCGTCGTCCATGACGATGGAGAACTGCGACCTTCAGAGTTTGGAGCTCAAAACGACATGTAAGATAGAGCCTATCAGCCATTCTCCTGAAATAATGCCAGTTTTCAACATGGGCACTTGTAATTTGGAAAGAAAGAATCGACCCAAGAAACCGCTGGGACAGCCCTCCAAGAATCTAATGGCAGAGAGGAGAAGAAGAAAGAGGCTAAATGATCGTCTCTCCATGCTAAGATCTATTGTCCCCAAGATTAGTAAGATGGATAGAACATCTATACTTGGAGACACGATAGACTACATGAAAGAACTTCTGGAAAAGATCAAAGATTTGCAGCAAGAAGTAGACTTGGATTCAAACACGTTGGAAGTTTTGAAGGATGCGAAACCAAATGAAATCATAGTGAGAAATTCACCCAAGTTTGATGTGGAGAGAAGGAACGCGGACATGAGGGTTGAAATATGCTGCGCAGGGAAGCCAGGCTTGTTGCTATCAACAGTGAACACCTTGGAAGCCTTTGGGCTTGAGATTCAGCAATGTGTTATCAGCTGCTTCAACGATTTTACGATGCAGGCTTCTTGCTCAGAGGAATTGGAGCAGAGGACGATAGTGGGTTCGGGAGATATAAAGCAAGCGTTATTTAGAAGCGCAGGATATGGGGGAAGATGTTTGTGA 1035 0.4261 MELSEHDFLEELLALKREAWDTIPSPNEENQFLFPNNAYNSLDCFDPNSLAFLPNSFSDQQVPQSYNNNYYSSFSEIFSTLHDEFSTSQIIDSSPPYITLDTTTSSLSTPPFLVQDDNNPLSSSSMTMENCDLQSLELKTTCKIEPISHSPEIMPVFNMGTCNLERKNRPKKPLGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKIKDLQQEVDLDSNTLEVLKDAKPNEIIVRNSPKFDVERRNADMRVEICCAGKPGLLLSTVNTLEAFGLEIQQCVISCFNDFTMQASCSEELEQRTIVGSGDIKQALFRSAGYGGRCL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0445 344 Coils Coil 214 248 - -
Lele28g0445 344 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 338 - -
Lele28g0445 344 CDD ACT_UUR-ACR-like 272 311 - -
Lele28g0445 344 Gene3D - 171 240 IPR036638 GO:0046983
Lele28g0445 344 SMART finulus 181 230 IPR011598 GO:0046983
Lele28g0445 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Lele28g0445 344 Pfam Helix-loop-helix DNA-binding domain 181 224 IPR011598 GO:0046983
Lele28g0445 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 238 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0445 Lele-ChrLele28 2828471 2829807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0445 157 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.550 1.11e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele28g0445 HLH 7.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0439 25 2749730 2753671 Lele28g0445 28 2828471 2829807 hybridization
Lele26g0450 26 2845571 2846904 Lele28g0445 28 2828471 2829807 hybridization