Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0442 ATGGAGAATTATTCAATCGCTTCCCAACCCGATTCCCGCCATTCCTCGCCTTATTCTCAAGAAGTCGATCACGAGAATCCATTGACGGACGATCCTCTTTTCACCACTACCACCAACAACAACCACAAAGCGAAGTTCGTTTGCAGCTATGGCGGAAATATTCAATTTAGGAGCCATGATAATCAGCTCGCTTACGTCGGCGGTGATACCAAGATCATAACCGTTGATCGCAGCATTACGTTCTCCGCTACGATGGCGAAGCTCTCTTCTCTCTGCAATGCTGATGTTTTCGTCAAGTACCAACTTCCCGGTGAAGATCTTGACGCTTTGATTTCGGTCACTAACGATGAGGATCTAGAGCACATGATGGTCGAGTATGATCTGTCTCAACGTGCGTCGGTGAAGCCCGCTAGGTTGAAGCTATTCCTATTTCCGCCAAAATCGTCGGCTCCGAGGAGTTTCGAGTCGAACGATTTGAAACCGGAGCATCAGTGGTTTGTTGACGCTCTCAATTCCGTGCACATTCCACATGTTAAGGGACCTTCAACGTCGGCACCTATATCGGCTGCGAATTCGGATTTTCTCTCTGGATTGGATTACAGATATTCAGTTGTTTCAACGACCAAAGTGCCTGATTCTGTTACTCCTGCTGCGTCCGCCATTCCGCATGTGGAGGCAAATGGTTCGCCTACGGGAACGGACGGTGGATCGGAAGATAGGCACATCATTGGAGAACCGGCGGGATCTCCAACTGAGATTCAGACACGGATCGAGGAGTCACAGAGATTTCATCTGGAAAAGAATGACCAGATCCTACTAAAAGGCGATGAATACAATGGCACAGTTAGTAAAACTATGGACCATCACTCTCAGAAAAATCCCGGGAAAGAGGAGACGCTGCTTGTTCACATAGTTCCAGCTCCCCTATCAGTTCCGGAATCGGCGGCAGTTTATTCGCCTGAAAGACTCATGACAAGTGCTAGTTATTCGTTAGCGGCTTCTGCAACTACTGTTACTGAGCAGCCATTGTATCTTATCGCAACCCCAGCCGTAATGTACCATGCTACCCCTTTGCAAGCCATGATTGGACCTGTAGGTCAGCCATACTATCCAGTCCCGAGAATGGTCCAAACAAGTGAATTCTACAATGGAGCACCACTGGCATCACTTTCACTTTCGCATTCACATTCACGGTCCAGAATTGGGGCTAACGGCGTTGAAACTAACGCATTAGTACAGCAAAAGGTTGGCGTGGCAGAGCCTGCTGGATACCCACAGATGGTATACGAGGACGCCGGAAGGCAGGTCTTCATTGCGGCTCCGGCAACTTGGGGTGGGGTGGTGCCCTCCACATCTAGAGGCGGCTGCTGGAAGAGATGGGACACAAGGCGGTGGGGCAACAACTCTGAATCAAGAAGGGAAGTGAGGACCCTTACACTTTACAGACCTGGTAGTTATCTCCATTATTCTTCCATGATTCATGTCATTCATTATTGA 1497 0.489 MENYSIASQPDSRHSSPYSQEVDHENPLTDDPLFTTTTNNNHKAKFVCSYGGNIQFRSHDNQLAYVGGDTKIITVDRSITFSATMAKLSSLCNADVFVKYQLPGEDLDALISVTNDEDLEHMMVEYDLSQRASVKPARLKLFLFPPKSSAPRSFESNDLKPEHQWFVDALNSVHIPHVKGPSTSAPISAANSDFLSGLDYRYSVVSTTKVPDSVTPAASAIPHVEANGSPTGTDGGSEDRHIIGEPAGSPTEIQTRIEESQRFHLEKNDQILLKGDEYNGTVSKTMDHHSQKNPGKEETLLVHIVPAPLSVPESAAVYSPERLMTSASYSLAASATTVTEQPLYLIATPAVMYHATPLQAMIGPVGQPYYPVPRMVQTSEFYNGAPLASLSLSHSHSRSRIGANGVETNALVQQKVGVAEPAGYPQMVYEDAGRQVFIAAPATWGGVVPSTSRGGCWKRWDTRRWGNNSESRREVRTLTLYRPGSYLHYSSMIHVIHY 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0442 498 SUPERFAMILY CAD & PB1 domains 59 152 - -
Lele28g0442 498 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 63 146 - -
Lele28g0442 498 SMART PB1_new 58 146 IPR000270 GO:0005515
Lele28g0442 498 MobiDBLite consensus disorder prediction 1 16 - -
Lele28g0442 498 MobiDBLite consensus disorder prediction 1 32 - -
Lele28g0442 498 CDD PB1_UP2 47 144 - -
Lele28g0442 498 Gene3D - 64 144 - -
Lele28g0442 498 PANTHER OS05G0427100 PROTEIN-RELATED 9 361 - -
Lele28g0442 498 Pfam PB1 domain 59 145 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0442 Lele-ChrLele28 2803461 2805073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0442 42 173 MAP Kinase Kinase Kinase AT5G57610 41.045 4.52e-26 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0436 25 2724254 2725699 Lele28g0442 28 2803461 2805073 hybridization
Lele26g0447 26 2820220 2822410 Lele28g0442 28 2803461 2805073 hybridization