Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0437 ATGAGAGGAAAGAGGACGAATCAGGTGCTTTGGCGGCCCCGAAGTGACGAAAGGCACGGGAACCGATTTCCTGATTTGGAAACCTTAAAGAAACAGAAAAAAGGAAATCTGAAATATCTTTCCGATACTTCATTTCCCATTTCCACGCAAAAAAGTGACGCGTGTCCTTATCGCTTCATTGTACTTCGGTTGGCGAGAACTCGACGAGTTTATGGCCGCGATCTTGCGAAGGGTGGGGTGGGGTCCACTGAGCGTGACGCGCATGACTCGCACATCCCAGATAAACTTCAGATCGAGTTAGGGCTCACAAACATAGACATGGGGAGAGGGAAGATCGTGATTAGGAGAATCGACAATTCGACGAGCAGGCAGGTAACGTTCTCCAAAAGAAGAAACGGTTTGCTGAAAAAGGCAAAGGAACTCGCAATCCTGTGCGACGCTGAGGTAGGAGCTATGATCTTCTCGAGCACCGGCAAGCTCTACGACTTCGCCAACACAAGCATGAAATCAGTAATCGAACGGTACGGCAAAACTAAAGAGGAAGATCATCAACTAGGAAGTTCAACTTCTGAAGTCAAGTTTTGGCAAGGGAAGGCAGCAATGTTGAGGCAACAACTGCAGAACTTGCAAGAGAGTCACCGGAAAATAATGGGAGAAGAACTTTCAGGTTTGACTGTCAAAGAATTACAGAGTTTAGAGAGCCAGTTGGAAATTAGCCTTCGAGGTGTCCGTTTAAAAAAGGATCAACTTTTAATGGATGAAATACAGGAAATAAACCAAAAGGGAAACCTCTTACGCCAGGAAAATGTGGAACTGCGCAAGAAGATAAACCTCATTCATCAAGAAAACAATGAATTAAAAAAGAAGGTCTATGGAACAAGAGATGGAAACGGAACAAACAGAAATTCTGTTCTCACAGATGGCCTAGGCATAGGAGAGAATTTGCATGTGCCAGTGAATCTCCAGCTTAGCCAACCTCATCAGCAAAACCATGAGTCACCTTCAGGAGACACAGAGTTGGGCAGATTGCAACTGCACTGA 1041 0.4524 MRGKRTNQVLWRPRSDERHGNRFPDLETLKKQKKGNLKYLSDTSFPISTQKSDACPYRFIVLRLARTRRVYGRDLAKGGVGSTERDAHDSHIPDKLQIELGLTNIDMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGAMIFSSTGKLYDFANTSMKSVIERYGKTKEEDHQLGSSTSEVKFWQGKAAMLRQQLQNLQESHRKIMGEELSGLTVKELQSLESQLEISLRGVRLKKDQLLMDEIQEINQKGNLLRQENVELRKKINLIHQENNELKKKVYGTRDGNGTNRNSVLTDGLGIGENLHVPVNLQLSQPHQQNHESPSGDTELGRLQLH 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0437 346 Pfam K-box region 188 276 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele28g0437 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 116 163 IPR002100 GO:0003677|GO:0046983
Lele28g0437 346 CDD MADS_MEF2_like 108 184 IPR033896 GO:0000977|GO:0045944
Lele28g0437 346 Gene3D - 119 199 IPR036879 GO:0003677|GO:0046983
Lele28g0437 346 PRINTS MADS domain signature 144 165 IPR002100 GO:0003677|GO:0046983
Lele28g0437 346 PRINTS MADS domain signature 129 144 IPR002100 GO:0003677|GO:0046983
Lele28g0437 346 PRINTS MADS domain signature 109 129 IPR002100 GO:0003677|GO:0046983
Lele28g0437 346 Coils Coil 192 219 - -
Lele28g0437 346 ProSiteProfiles MADS-box domain profile. 107 167 IPR002100 GO:0003677|GO:0046983
Lele28g0437 346 ProSiteProfiles K-box domain profile. 192 282 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele28g0437 346 SUPERFAMILY SRF-like 108 186 IPR036879 GO:0003677|GO:0046983
Lele28g0437 346 MobiDBLite consensus disorder prediction 1 21 - -
Lele28g0437 346 PANTHER SERUM RESPONSE FACTOR HOMOLOG 109 318 - -
Lele28g0437 346 Coils Coil 255 289 - -
Lele28g0437 346 MobiDBLite consensus disorder prediction 325 346 - -
Lele28g0437 346 SMART madsneu2 107 166 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0437 Lele-ChrLele28 2774150 2784314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0437 107 336 MADS-box Gene Family AT2G22630 57.826 1.28e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele28g0437 K-box 9.2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0444 26 2790902 2800357 Lele28g0437 28 2774150 2784314 hybridization