Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0433 ATGCCTCACAGAGCGACTTACTTTTTCCCAAGGCAATTCCCGGAGCGGGGGTTGAATGAATCTTCGAAACAGCTATTAGATCACGAGGAGAAGAAACATGTCAACTCCATCAAATCAGAAACCTTTGATGTTGAAAGCGACCCCAAAAAGGCAATTACAACAACTACTGCTACAACTACAAAGGACGATGTCGTTTTCCCGTCTGGGAAACACTCTGCTGTATCCGACCTTTTCACGGGCAATGACAAGTTCCGGACTAAGCAGAAGCAAGTTGCTGCTTTCCGCGACTGGTTGATAGAGAAAAAAGTGGATAGATCGGGTCACGTGAAACCACACTACCGCTGGTTATCCTGTGAAGGGGACCGCGAGCTTCTGCTTCCGTTGGAGTCCGTGCCACCGCCGGCTCCACCGGAGAGAGTGAAAGATGCAATCGACCGGAGTTTTGACCGCCAAGTCTCGTTGCCGCGGTTATCCAGCGGCAGTAGCTATACTGGGAGCTTGTTCTCGGGGACAACGTTGGACGGCAATTTTTCTAGCGACATCAAGGAGGAGACGACGTCGTCTCGAGTCTCCACCAGAACAAGAAGACTGGAGGAAGAGGAGGAAGAAAGTAAAGAGACGGTGGCGCAGAAGTGCAAAGAGAGCTACTGCCTGCAGATCACGCTGGCTAAGAGACTCACCTGTCTAGAAAGTCTCGCTGCTGATGAGCCCGTGCTTACTTTGGACGCGGGAATCGAGACGTGGGATGTGGAATCCGTTTCTTATCGTCTCTGGGTTAGTGGCTGCCTATCATACTCCGACAAAATATCAGATGGTTTTTATAACATCTTGGGGATGAATCCATATCTGTGGGTGATGTGCAATGAGCTGGAGGAAGGTAGGCGGCTCCCACCTTTGATGACGCTTAAAGCAGTCGAACTAAGCGAGACGTCTATGGAGGTGGTTCTTGTAGATAGACACGAGGACTCTAGGCTAAAGGAACTCCATGATAAAGCACAAGAATTGTATTGTGATTCAGAGAACACCTTGGTATTGGTGGAAAAACTTGGAAAACTTGTTGCGATATATATGGGGGGTACCTTCCCGGTGGAGCAAGGAGATCTCCACAGGCAATGGAAGTTGGTTAGTAACAGATTGAGTAATTTTCAGAAGTGTGTTGTGCTTCCTATCGGCAGCCTATCTGCAGGACTTTGCCGGCATCGGGCAATCCTCTTTAAGAGATTGGCAGATTACATTGGTTTGCCATGTCGCATTGCTCGAGGTTGCAAGTATTGTGCTGCTGATCATAGATCTTCTTGCCTTGTCAAGATTAAAGATGACAGGCAACTCTCAAGGGAATATGTAGTTGATCTAGTTGGGGAACCTGGAAATGTCCATGGGCCAGATTCCTCAATTAATGGAGCATATGTCTGTTCAACGCCTTCCCCTTTTCAAATTTCTCATATACTGGAATCCCGGTATCCTTATATGGATAATGCATCAAGTTCTCGGTGTTCTACTTCCATAGACAAAAGTCATTTATATTCTGGCTGTACAGAGAAAGATCAACTGGTCAAAGGAAATAATTTGCGTAAACGTCCTGTGAACTCAAAATATGCTTCAGTTGATCAAACTCATGCAGTTAATGTAGAGGAACATGAAGTTCTAGGTTCGAATTTGCCTTCCATTCAGGAAGGTGTTTCTGAAGACGTGCATTCAGTCACTGAGGCATTGTTGCATGAATATCCGATGCATGTTGAGGATTCAGTGGGCATAAAAGGAACTTCCAATAATGAGATCATTGTAACTGGAAGTCCAGCGGTAAAAGCAACTTCTAAGAAACCTATACTGGGCCCATCCGGCCAGTCAGAACAAGAATCTGTAGATAGCAGACTTAAAAACCGTGACAATTTTTCTGCTGCAAACATTCCAAGATATTTGAATCTTGAACCATCACTCGCCATGGATTGGCTTGAAATATCGTGGGACGAATTACGCATTAAAGAGCGTGTTGGTGCTGGGTCATTTGGGACAGTTCACCGTGCTGAATGGCATGGATGTGATGTTGCAGTTAAGGTTTTAACAATTCAGGACTTCCAGGATGACCAGTTGAAAGAGTTTCTCAGAGAGGTTGCAATAATGAAACGTGTCCGCCATCCAAATGTTGTGCTCTTCATGGGTGCAGTTACAAAACGGCCTAATCTATCCATTGTAACAGAATATTTGCCGAGGGGTAGTTTATTCCGCCTGATACATAGGCCAGCATCTGGTGAAATGTTGGATCAGAGAAGACGATTACGGATGGCTTTAGATGTGCCTGAGTGGATGGCTCCGGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTTTACAGCTTTGGAGTCGTCCTGTGGGAACTTGTAACCATGCAGCAACCATGGAATGGACTCGGTCCTGCCCAGGTGGTTGGAGCTGTTGCTTTTCAGAATCGGAAGCTTGCTATCCCTCCAAACATCTCCCCAGTATTGGCCTCCCTCATGGAATCTTGTTGGGAAGATGATCCCAAGAAACGGCCTTCTTTCACCAGTATAGTAGAATCGCTAAAGAAGCTGCTGAGATCTCCAGTGGAGATGATAAAGATGGAACGGACATAA 2619 0.4612 MPHRATYFFPRQFPERGLNESSKQLLDHEEKKHVNSIKSETFDVESDPKKAITTTTATTTKDDVVFPSGKHSAVSDLFTGNDKFRTKQKQVAAFRDWLIEKKVDRSGHVKPHYRWLSCEGDRELLLPLESVPPPAPPERVKDAIDRSFDRQVSLPRLSSGSSYTGSLFSGTTLDGNFSSDIKEETTSSRVSTRTRRLEEEEEESKETVAQKCKESYCLQITLAKRLTCLESLAADEPVLTLDAGIETWDVESVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNELEEGRRLPPLMTLKAVELSETSMEVVLVDRHEDSRLKELHDKAQELYCDSENTLVLVEKLGKLVAIYMGGTFPVEQGDLHRQWKLVSNRLSNFQKCVVLPIGSLSAGLCRHRAILFKRLADYIGLPCRIARGCKYCAADHRSSCLVKIKDDRQLSREYVVDLVGEPGNVHGPDSSINGAYVCSTPSPFQISHILESRYPYMDNASSSRCSTSIDKSHLYSGCTEKDQLVKGNNLRKRPVNSKYASVDQTHAVNVEEHEVLGSNLPSIQEGVSEDVHSVTEALLHEYPMHVEDSVGIKGTSNNEIIVTGSPAVKATSKKPILGPSGQSEQESVDSRLKNRDNFSAANIPRYLNLEPSLAMDWLEISWDELRIKERVGAGSFGTVHRAEWHGCDVAVKVLTIQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPNLSIVTEYLPRGSLFRLIHRPASGEMLDQRRRLRMALDVPEWMAPEFLRGEPSNEKSDVYSFGVVLWELVTMQQPWNGLGPAQVVGAVAFQNRKLAIPPNISPVLASLMESCWEDDPKKRPSFTSIVESLKKLLRSPVEMIKMERT 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0433 872 Gene3D Phosphorylase Kinase; domain 1 651 735 - -
Lele28g0433 872 Pfam Ethylene-responsive protein kinase Le-CTR1 250 458 - -
Lele28g0433 872 Pfam Protein tyrosine and serine/threonine kinase 766 856 IPR001245 GO:0004672|GO:0006468
Lele28g0433 872 Pfam Protein tyrosine and serine/threonine kinase 658 765 IPR001245 GO:0004672|GO:0006468
Lele28g0433 872 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 225 765 - -
Lele28g0433 872 ProSitePatterns Protein kinases ATP-binding region signature. 664 685 IPR017441 GO:0005524
Lele28g0433 872 Gene3D Transferase(Phosphotransferase) domain 1 736 871 - -
Lele28g0433 872 SUPERFAMILY Protein kinase-like (PK-like) 634 855 IPR011009 -
Lele28g0433 872 ProSiteProfiles Protein kinase domain profile. 658 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0433 872 MobiDBLite consensus disorder prediction 179 205 - -
Lele28g0433 872 FunFam Serine/threonine-protein kinase isoform 1 648 736 - -
Lele28g0433 872 MobiDBLite consensus disorder prediction 186 205 - -
Lele28g0433 872 CDD STKc_MAP3K-like 664 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0433 Lele-ChrLele28 2683641 2689344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0433 1 869 MAP Kinase Kinase Kinase AT4G24480 52.376 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lele28g0433 EDR1 1.5e-76 CL0125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0425 25 2595460 2601012 Lele28g0433 28 2683641 2689344 hybridization
Lele26g0436 26 2682788 2688504 Lele28g0433 28 2683641 2689344 hybridization