Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0427 ATGGAGAAAAACACGATTGGGCGTCATTGGGAAGGAATATTCACTTCCAATGCATGTATTAGGGGCTCTAGTTGTGGATTTATTAATATCGCGAGGATTGATTCATGTTTTGGTTACATGCACGTGCGAGGGTATTTCTACATACTAACACCATTAACCAAAGCCAAACCTGGCGTATTTCTAGCATATTTCTATGTCTGCCTGGAGAGCGCTCTTTGCTTGTCTCATTCTTCTTTCGGCTTCAACGAGGACTTAACAATGATGGAAGGTGGCAAGAAGAGCAAGAAGGTCGCTTTTAGCGAGGAAGACACTGCTGCTCTCTTAGAGAAGTATGATGCAATCACCATTCTAACTTTACTTCAGGAAGTGTCAAATTTAAACTATCCTGAGGGCAAGATTGATTGGAATGAGTTGGTAAAAATTACAGCAACTGGGATATCAAATGCTCGAGAGTGTCAGATGTTGTGGCGTCATCTTGCGTATAGTGATGACTTGACTGAAAATTTGGAAGACGGTGCTGAACTTCTGGACGACGACAGTGACTTGGACTGTGAGATGGAAGTGGTACCCCCTATAAACAGTGAGGCTGTATCGGAGGCTTCAGCTTGTGTGAAGGTTATGATAGCTTCTGGTTTGCTTAGTGAAATGGGTCCTAGTAGCTCTACAATTGAGGCTCCGATGACTATAAATATTCCAAATTGTCATTCATCTACAAATCCTGAGGAAAATATAAAGCCCTCAAACTTGATACAAGGAACAAGTGTTATTTTTCCTGTTACTGTTCAGAGACAGACACTACCATCTGGATCTGTGACTGAAGGTGTAGAAGCCAAGGGAACAACTGGTGGCAAATTGTCTTCCAAAAGGAGAAGAAAAGCGTGGTCAGAAGAAGAGGACAAGCAACTAAGAGCAGCTGTTCAGAAATGTGGTGAGGGAAATTGGGCAACTATGTCGAAAGGACATGACTTCCCTATCAAAAGAAGTCCTACACAGTTGGCTCAGAGGTGGAGCATTTTACGGAAGAAAGATGGCACTACAAATTCAGGAACAAACTTGACCAGCACGCAGTTTACTGCTGAACAATTGGCAACTCGTCACTCATTATCTTTAGCCCTTGATATGCCATTAAAAAAATTAACTGCTCCTGGAACAATTGATCCTGCTAGGACATCATTAAATGCATCAATTAAGAACGCTGTGCAACCTATTAATACTGCTGAAGCTTCAACAGTTCAGACCAGTTCTGTGCCACCTCAGCTTCCATCTCAACAAGCGGCATTGGGTCCTTCTGCTTCCTTAGCAAATTCTTTAGTCCCTGAAAGAACAATGCTGAAGTCAAATACAAGTGCTGATGCTGCTGTAAGAGCTACTGCAGTTGCAGTTGGTGCTCGAATCGTCTCCTCGGCAGATATTTTGTCAGTGCAAAAGGCTACTCAGGACAAAAGCGCTGGACAAATTATGCCCACAGGCAATTCTTCAATGAAGCCGTTCGCATCTGCTGGTTCTGTCATTCACCCAAAAGTTCTTATAAATCCAGTTGTTTCTCCTAAAGCTGTTGCTACTGCACCTCCTCCTTGCACTACTGCTGTTAAATTTGTCTCCCCATCGGGTGAGAGTACTTCTAATGCCCATAGCTCTGTGGTCAATAATCTTCCCTTGGAGCAAGTTAATCCTAACAAAGAATCCAAAGTGTCTAATTCTAGTGTTGAAACAAAGGCGAGGAACCAAGTTGAGCCACCAGTCACAGAGAGTATACCTAATGAGGAGATTTTAGAGAATAAACCAGTTTCACAAGATCCAGGAGAGCTGGATGAGCAGGGAGTAGTTTGA 1830 0.4295 MEKNTIGRHWEGIFTSNACIRGSSCGFINIARIDSCFGYMHVRGYFYILTPLTKAKPGVFLAYFYVCLESALCLSHSSFGFNEDLTMMEGGKKSKKVAFSEEDTAALLEKYDAITILTLLQEVSNLNYPEGKIDWNELVKITATGISNARECQMLWRHLAYSDDLTENLEDGAELLDDDSDLDCEMEVVPPINSEAVSEASACVKVMIASGLLSEMGPSSSTIEAPMTINIPNCHSSTNPEENIKPSNLIQGTSVIFPVTVQRQTLPSGSVTEGVEAKGTTGGKLSSKRRRKAWSEEEDKQLRAAVQKCGEGNWATMSKGHDFPIKRSPTQLAQRWSILRKKDGTTNSGTNLTSTQFTAEQLATRHSLSLALDMPLKKLTAPGTIDPARTSLNASIKNAVQPINTAEASTVQTSSVPPQLPSQQAALGPSASLANSLVPERTMLKSNTSADAAVRATAVAVGARIVSSADILSVQKATQDKSAGQIMPTGNSSMKPFASAGSVIHPKVLINPVVSPKAVATAPPPCTTAVKFVSPSGESTSNAHSSVVNNLPLEQVNPNKESKVSNSSVETKARNQVEPPVTESIPNEEILENKPVSQDPGELDEQGVV 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0427 609 Pfam Myb-like DNA-binding domain 291 336 IPR001005 -
Lele28g0427 609 ProSiteProfiles Myb-like domain profile. 286 340 IPR001005 -
Lele28g0427 609 MobiDBLite consensus disorder prediction 550 582 - -
Lele28g0427 609 MobiDBLite consensus disorder prediction 550 609 - -
Lele28g0427 609 MobiDBLite consensus disorder prediction 268 299 - -
Lele28g0427 609 CDD SANT_TRF 292 341 - -
Lele28g0427 609 SUPERFAMILY Homeodomain-like 289 342 IPR009057 -
Lele28g0427 609 Gene3D - 284 346 - -
Lele28g0427 609 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 286 344 IPR017930 -
Lele28g0427 609 SMART sant 290 342 IPR001005 -
Lele28g0427 609 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 87 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0427 Lele-ChrLele28 2639825 2648910 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele28g0427 Myb_DNA-binding 5.4e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0418 25 2546711 2553627 Lele28g0427 28 2639825 2648910 hybridization
Lele26g0430 26 2640453 2648260 Lele28g0427 28 2639825 2648910 hybridization