Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0423 ATGGCGAGAGAGAAGATTAAGATCAAGAAAATTGACAACGTGACGGCGAGGCAGGTGACTTTCTCTAAAAGAAGACGAGGGCTCTTCAAGAAAGCCTCTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGGGCTCATTGTCTTCTCTGCAACTGGAAAGCTCTTTGAATACTCCAACTCCAGCATGAAGGACGTAATTACGAGGTATAATATGCACTCTCGTGACATCAACAAACTAGACAGACCTTCTCTAGAACTGCAGCTAGAGAACAGCGACAACTGCAAATTGGGTAAAGAAATCGCAGAAAAAACGCAGCAGCTAAGGCGCATGAAAGGCGAAGATCTTCAAGGACTTAACCTAGAAGATCTGCTGCAACTGGAGAAACTGCTTGAAACAGGAATCGGCCGCGTCATTGAGACGAAGGAAAATCGGATTATGAATGAGATCACCGCACTTCAGAAAAAGGGAATTGAGTTGGTAGAAGAGAACAAGCAGCTGAAGCAGAAGATGGAGATGTTGTGTAGAGGAATAATGCAAGTTCAGGCGGTGGACTCATCAGATGTTGGGATGCAAGAAGAAGGCCTCTCATCAGATTCAATGACCAACGTTTACAGCTGCAACAGTGGCCCTCCTCTTGACGATGATTCTTCTGACACTTCTCTCAAGTTAGGGTAA 675 0.4504 MAREKIKIKKIDNVTARQVTFSKRRRGLFKKASELSVLCDAEVGLIVFSATGKLFEYSNSSMKDVITRYNMHSRDINKLDRPSLELQLENSDNCKLGKEIAEKTQQLRRMKGEDLQGLNLEDLLQLEKLLETGIGRVIETKENRIMNEITALQKKGIELVEENKQLKQKMEMLCRGIMQVQAVDSSDVGMQEEGLSSDSMTNVYSCNSGPPLDDDSSDTSLKLG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0423 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele28g0423 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele28g0423 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele28g0423 224 FunFam Transcription factor, MADS-box 13 83 - -
Lele28g0423 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele28g0423 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele28g0423 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele28g0423 224 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Lele28g0423 224 MobiDBLite consensus disorder prediction 185 224 - -
Lele28g0423 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Lele28g0423 224 Coils Coil 149 169 - -
Lele28g0423 224 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lele28g0423 224 Pfam K-box region 94 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele28g0423 224 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele28g0423 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele28g0423 224 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0423 Lele-ChrLele28 2614207 2618910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0423 1 224 MADS-box Gene Family AT2G22540 58.051 6.15e-93 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele28g0423 K-box 3.6e-14 No_clan