Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0422 ATGGGGCCTGGTCCTGCTCTTGTCCGATCAGGACCTTCCCGGCTCAAGAGAGTTCGCCAGTTTGGCCCAGGAAACGGAACCTCTTCTGGAGGGTTCCGTCCTAAACTGGCCGTCGTCGACGTCCTCCTCGCCGCTGATAATCGATTAAACAACCACCACGATTGGTACGCCATTCTTCAAGTTGATTGCCGATCGGACGACATAGATCTCATCAAGAAGCAATATCGGAGGCTCGAACTTCTCCTCCACCCAGACAAGAACAGGTTCTCCTACGCTGATCATGCATTCAAGCTCGTCGCCGAGGCATGGGCTACGCTATCGGATCCCATCAAAAAGTCTTTCTACGACAAGGAGCTTGGTCCCTTCTCTACGGTTGATTTGAGCGCGCCCGGCTGGTCTAATCAACAAAAATTGCCGGTTCGAAGAGCCGGAGCGGGGTCCGGTGGTGGTGGGAACCCGGGGTTTGATTTCAGGAACAATGGCACTGCCACTAGGGACGCTGCGGCCGATGAGAATTCACGACGGAACCCGTCGACCTTCTGGACTGCGTGCCCGTACTGTTATTTGCTGTGCGAGTATGATAAGATTTACGAGGGATATTGTCTAAGGTGCCAGAACTGTGAGAGATCATTCCATGGGGTTTCGATACCGACTTTGCCGCCTCTTGTGGCCGGCCAGGAGGCCTATTACTGTTGCTGGGGATTCTTTCCACTAACCTTAGCCACTGCTAATGTCGCCGGCAAAGAAGCCTCGACTCCTTCAGGATTTCCAAATTGGACTCCCATGGCATCTGAATCTGGCCGGCAATCAGAGAATGGTTGGGATAAAGCAGAACCCGTGGCGGCCACTAAGACGGCGAAGGCCGGGGGCGTTTCTAATGGGATATCTTCAGGTTCGGGATCTAGTGGTCGGAAGCGAGGAAGAGCGAAGAAGGCCCCTGCGGAATCCTTTGTTGTCATAAACTAG 966 0.5383 MGPGPALVRSGPSRLKRVRQFGPGNGTSSGGFRPKLAVVDVLLAADNRLNNHHDWYAILQVDCRSDDIDLIKKQYRRLELLLHPDKNRFSYADHAFKLVAEAWATLSDPIKKSFYDKELGPFSTVDLSAPGWSNQQKLPVRRAGAGSGGGGNPGFDFRNNGTATRDAAADENSRRNPSTFWTACPYCYLLCEYDKIYEGYCLRCQNCERSFHGVSIPTLPPLVAGQEAYYCCWGFFPLTLATANVAGKEASTPSGFPNWTPMASESGRQSENGWDKAEPVAATKTAKAGGVSNGISSGSGSSGRKRGRAKKAPAESFVVIN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0422 321 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Lele28g0422 321 CDD DnaJ 54 108 IPR001623 -
Lele28g0422 321 Gene3D DnaJ domain 43 125 IPR036869 -
Lele28g0422 321 MobiDBLite consensus disorder prediction 251 321 - -
Lele28g0422 321 MobiDBLite consensus disorder prediction 142 175 - -
Lele28g0422 321 SMART dnaj_3 53 111 IPR001623 -
Lele28g0422 321 ProSiteProfiles dnaJ domain profile. 54 119 IPR001623 -
Lele28g0422 321 SUPERFAMILY Chaperone J-domain 47 119 IPR036869 -
Lele28g0422 321 MobiDBLite consensus disorder prediction 251 270 - -
Lele28g0422 321 Pfam DnaJ domain 54 116 IPR001623 -
Lele28g0422 321 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 36 286 - -
Lele28g0422 321 MobiDBLite consensus disorder prediction 289 303 - -
Lele28g0422 321 PRINTS DnaJ domain signature 75 90 IPR001623 -
Lele28g0422 321 PRINTS DnaJ domain signature 91 111 IPR001623 -
Lele28g0422 321 PRINTS DnaJ domain signature 56 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0422 Lele-ChrLele28 2608414 2611385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0422 36 310 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.034 4.91e-67 212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0413 25 2506230 2507827 Lele28g0422 28 2608414 2611385 hybridization
Lele26g0425 26 2604392 2605390 Lele28g0422 28 2608414 2611385 hybridization