Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0400 ATGGAATTTGAGGAGCACGACGAGCAGGACGACGACATCCAGATCCCATCGTCGCCTCCTGCTTACGACTCCCTCCCCAAAATAACCGTCTCCGGAGGAGGAGCAGGGGAAGAGGGTGGCGCCTCCGCCGTCACGCCTGGCCGTAAAGCTGACCCCGCGGTGACAACCAGGTACCGAGAATGCCAGAAGAACCACGCCGTCAGCCTCGGTGCACACGCTGTCGACGGCTGCGGAGAGTTCATCGCGGCGGGAGAGGAAGGCACGCTCGACGCGCTAAAATGCGCCGCCTGCAACTGTCACCGCAATTTCCACCGTAAGGAGACGGACGGCGGGGACATGACTCCGTACCAGCCGCCTCAGCCTCATTACCAGTATCACCACCAATATCCACCGTACTACCGTGCGCCTCCGCCTCCAGCTGGGTACCTCCACCACCATCTGACGGTTCAGCCGATGGCGCTGCAGCGGTCTCTGGCCCTGCCGGCTCCTGCGCCGATTAGAGATGAAGAGGACATGTCAAATCCGAGCAGCAGCGGAGGCGGGGGAGAGAAGAAGAGGCATAGGACGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTCGCGGAGCGTGTCGGGTGGAGAATCCAGAAGCACGATGAAGCTGCGGTGGAGCAATTCTGTGCGGAGACCTGTGTCAAGAGACATGTACTTAAGGTTTGGATGCACAATAACAAGAGCTCTCTCGGTAAGAAACCCTAA 744 0.5941 MEFEEHDEQDDDIQIPSSPPAYDSLPKITVSGGGAGEEGGASAVTPGRKADPAVTTRYRECQKNHAVSLGAHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKETDGGDMTPYQPPQPHYQYHHQYPPYYRAPPPPAGYLHHHLTVQPMALQRSLALPAPAPIRDEEDMSNPSSSGGGGEKKRHRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKSSLGKKP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0400 247 MobiDBLite consensus disorder prediction 165 195 - -
Lele28g0400 247 MobiDBLite consensus disorder prediction 1 51 - -
Lele28g0400 247 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Lele28g0400 247 MobiDBLite consensus disorder prediction 181 195 - -
Lele28g0400 247 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
Lele28g0400 247 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 184 240 IPR006455 -
Lele28g0400 247 Gene3D - 169 244 - -
Lele28g0400 247 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 242 - -
Lele28g0400 247 FunFam Zinc-finger homeodomain protein 2 171 245 - -
Lele28g0400 247 SUPERFAMILY Homeodomain-like 174 245 IPR009057 -
Lele28g0400 247 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0400 Lele-ChrLele28 2450074 2450817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0400 1 243 ZF-HD Transcription Factor Family AT4G24660 52.419 1.19e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele28g0400 ZF-HD_dimer 3.5e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0391 25 2368538 2370330 Lele28g0400 28 2450074 2450817 hybridization
Lele26g0403 26 2442365 2443882 Lele28g0400 28 2450074 2450817 hybridization