Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0392 ATGACTGCTGATCGTCCAAGAACAGATGTTATGAGGAAGAAAAGGAAAGGAAGCGAGACAAATGCATCCTCAAATCTTCCAGAAATTTTGACTTCACATCATGGGAACCATGGATCTCTGTCATCAAATTTGAAGTTTCATTACTCGCTTGAAGATTGTTCCAGGTTGAAGAAGAGGTGTAAAGAAGATGCTGATGCAGAACCGGTTACTTCCTGTAATAAAAGGCTTGCAGGCTTTGCCACCGCTCCACCTTGTGGGACATCATCTTTGATCACACCTGGAAGAGGTCTTAAGAGGAAGATAGGATGCATTGATGTTGCTACCCAAATGGGCAGGAAGAAGAGGATAGAGGATGATTATGTTTTTGGGGAAACAATTGGGCAAGGAAAATTTGGATCTGTATCTTTGTGTTGGTCCAGGCTTAGTGGAGCAGAATATGCATGTAAGACCCTGAGGAAGGGGGAGGAGACAGTTCATCGAGAAGTGGAGATAATGCAACACTTATCTGGACATCCAGGGATTGTGACGCTGCAGGCAGTGTATGAAGAAGCTGACTGCTTCCATCTTGTAATGGAGTTGTGTTCTGGAGGGCGATTGATTGATAGGATGGTTAAGGAAGGCCCTTATACAGAGCAAAGGGCTGCTAATGTACTCAAGGAAGTGATGTTAGTCCTAAAGTATTGTCATGATATGGGAGTTGTTCACAGAGATATCAAACCTGAAAATATCCTGCTAGCAGCATCAGGAAAAATAAAGCTTGCAGATTTTGGGCTGGCCATGAGAATATCTAATGGTCAGAACTTGACTGGTTTGGCTGGAAGCCCTGCATATGTTGCTCCGGAGGTATTGCTGGGTAGCTATTCTGAGAAGGTGGATGTATGGAGTGCTGGAGTCCTCCTGCATACTCTGTTAGTTGGCTTTCTTCCATTTCATGGAGATTCGTTGGAAGCAGTTTTTGAGGCTATTAAGAATGTCAAACTGGATTACCAAAAGGGTATGTGGGATTTGATATCTAAGCCCGCCCGAGATCTTGTTGGGAGGATGCTGACAAGGGATGTTCCAGCAAGGATAACAGTTGATGAAGTACTCAGGCATCCATGGATACTATTCTACACAGAACCAACTTTAGAAAAACTGCCCAGCAGAACAAGGCTGAAGCATCAAATAGGAGCCACTTGCCGCCTGTTTGTAGCGACTGGACATAGGTCAGGAGGAAACAAGATAGACGATGGTGAAATTTCAAGGCCGCTTTCATCCTCGGAGAGTAGCGATTCAGGTGATGAGGACGATGGTGTGTTGATTGATGTGTTGGCATCTGCAATTTCACATGTGAGGATATCCGAACCCAAGAGAAGCAGGTTGTGTGGACCAACAGGTCCAATAGATCAGCAAGGATCATCTAACATGAAGTCTAACAACCTCTGTAAAGCATTTTGA 1437 0.444 MTADRPRTDVMRKKRKGSETNASSNLPEILTSHHGNHGSLSSNLKFHYSLEDCSRLKKRCKEDADAEPVTSCNKRLAGFATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKRIEDDYVFGETIGQGKFGSVSLCWSRLSGAEYACKTLRKGEETVHREVEIMQHLSGHPGIVTLQAVYEEADCFHLVMELCSGGRLIDRMVKEGPYTEQRAANVLKEVMLVLKYCHDMGVVHRDIKPENILLAASGKIKLADFGLAMRISNGQNLTGLAGSPAYVAPEVLLGSYSEKVDVWSAGVLLHTLLVGFLPFHGDSLEAVFEAIKNVKLDYQKGMWDLISKPARDLVGRMLTRDVPARITVDEVLRHPWILFYTEPTLEKLPSRTRLKHQIGATCRLFVATGHRSGGNKIDDGEISRPLSSSESSDSGDEDDGVLIDVLASAISHVRISEPKRSRLCGPTGPIDQQGSSNMKSNNLCKAF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0392 478 MobiDBLite consensus disorder prediction 459 478 - -
Lele28g0392 478 SMART serkin_6 120 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0392 478 Pfam Protein kinase domain 120 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0392 478 ProSiteProfiles Protein kinase domain profile. 120 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0392 478 SUPERFAMILY Protein kinase-like (PK-like) 111 386 IPR011009 -
Lele28g0392 478 Gene3D Transferase(Phosphotransferase) domain 1 111 403 - -
Lele28g0392 478 MobiDBLite consensus disorder prediction 1 36 - -
Lele28g0392 478 CDD STKc_CAMK 119 367 - -
Lele28g0392 478 PANTHER SERINE/THREONINE-PROTEIN KINASE 106 387 - -
Lele28g0392 478 MobiDBLite consensus disorder prediction 1 19 - -
Lele28g0392 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Lele28g0392 478 MobiDBLite consensus disorder prediction 451 478 - -
Lele28g0392 478 MobiDBLite consensus disorder prediction 20 36 - -
Lele28g0392 478 FunFam Serine/threonine-protein kinase PEPKR2 111 433 - -
Lele28g0392 478 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Lele28g0392 478 MobiDBLite consensus disorder prediction 406 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0392 Lele-ChrLele28 2409643 2412083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0392 104 367 EF-hand Containing Proteins AT2G38910 42.909 9.11e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele28g0392 Pkinase 1.6e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0382 25 2327533 2330527 Lele28g0392 28 2409643 2412083 hybridization
Lele26g0398 26 2401631 2404652 Lele28g0392 28 2409643 2412083 hybridization