Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0387 ATGGCCGCCCTTCTTCTCTCCCTCCTACTCCTGCTCCTTCACTCCTCTTTCCCTTCCTTCGCACAGTTCACAATTACCCCTCCTTCCTCTCCGCCGGCAGATTCATTATCCCAGGTCAGATTCGATAAATCTATGGCCGTCGTTTTGGTCATATTAGTCGTCGTCTTCTTCGCCTTGGGCTTCATCTCTGTCTACTCTCGTCAATGTGCAGAACGACGATTCCGAGGAACCGACGATTTACCAACGGGCAACAGCCAGCGCAACTCCCGCGGCCTCGACCCCGAAATCATCCGCACCTTCCCTACCTTCGTCTACTCCACCGTCAAGGGCCTTAAAATTGGGAGAAGCACCCTGGAATGCGCCGTCTGCTTGAACGAGTTTCAAGACCAGGAAACTCTGCGTTTCATTCCCAAGTGCAGTCACGTCTTCCACCCCGCTTGCATCGATCTCTGGTTATCCTCTCATTCTACCTGTCCCGTTTGTCGGGCCAACCTCGTTCCCAGACCGGGTGAGGTCTCTTTCGTCGCCATTCAAATGCCCGACTCTCCGACCGAATCCGAGCAGCAACAGCACGCCGGCGATATCACCCAACATGATCAACAAGTAGGTGAACCGTCCCCCAAGAACAGAGATATCGTCCATCAGAGTCCTCCGCCGAGGTCAGGGATTGCGAGCTTGTTTCCACGATCACACTCGACAGGACACTCGCTGGTTTCGTCGGTGGAGGATCGAGAGAGATATACTCTAAGATTGCCGGAGGAGGTGAGGAAGGGGCTTCTGCAGCCGGCGTTCGAGAGAATGAGTAGTGAGAGGAGCGGTTACAGGACGAGAAGCGTGGGGAGTGGAGGTGGGCGGTTCGAGCGGTTCAGGAGGGAGGGGCGGTCCGACTGGTGGGGGTTCATCCATAGGAATTCACCGAGGGAGAGCAGCAGGAAGCCAGCACATGCAGCCATGGAAAACTTAGAAGAAAGATCAACGGATCGGTTATGGGGAGAGCCAAGTGAGGATTAG 1011 0.5519 MAALLLSLLLLLLHSSFPSFAQFTITPPSSPPADSLSQVRFDKSMAVVLVILVVVFFALGFISVYSRQCAERRFRGTDDLPTGNSQRNSRGLDPEIIRTFPTFVYSTVKGLKIGRSTLECAVCLNEFQDQETLRFIPKCSHVFHPACIDLWLSSHSTCPVCRANLVPRPGEVSFVAIQMPDSPTESEQQQHAGDITQHDQQVGEPSPKNRDIVHQSPPPRSGIASLFPRSHSTGHSLVSSVEDRERYTLRLPEEVRKGLLQPAFERMSSERSGYRTRSVGSGGGRFERFRREGRSDWWGFIHRNSPRESSRKPAHAAMENLEERSTDRLWGEPSED 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0387 336 SMART ring_2 120 161 IPR001841 -
Lele28g0387 336 Pfam Ring finger domain 119 162 IPR001841 -
Lele28g0387 336 SUPERFAMILY RING/U-box 114 169 - -
Lele28g0387 336 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Lele28g0387 336 MobiDBLite consensus disorder prediction 181 203 - -
Lele28g0387 336 MobiDBLite consensus disorder prediction 268 287 - -
Lele28g0387 336 MobiDBLite consensus disorder prediction 303 336 - -
Lele28g0387 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 167 IPR013083 -
Lele28g0387 336 MobiDBLite consensus disorder prediction 181 243 - -
Lele28g0387 336 CDD RING-H2_EL5_like 119 162 - -
Lele28g0387 336 PANTHER RING FINGER DOMAIN-CONTAINING 26 173 - -
Lele28g0387 336 MobiDBLite consensus disorder prediction 305 336 - -
Lele28g0387 336 FunFam E3 ubiquitin-protein ligase ATL6 81 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0387 Lele-ChrLele28 2384780 2385790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0387 1 261 Rapid Response to Elicitors AT3G05200 39.706 1.63e-54 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0408 01 2396832 2400380 Lele28g0387 28 2384780 2385790 CCT
Lele03g0420 03 2401533 2405058 Lele28g0387 28 2384780 2385790 CCT
Lele04g0414 04 2452428 2460832 Lele28g0387 28 2384780 2385790 CCT