Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0386 ATGGCACTTGAGGCTGTGGTCTTCCCACAAGATCCATTCAACTATTGTTATATGTTAGGGCTCGGTTATGGTTTGGAAGCAGAACAAGAGAGAGCATTTGCTGGCATCACAGGCAATGCGAATTGGGATTATTCTTCTGTGCTGCAAGATGTGACGGAATCATGGGACAGCTCAAACTCATCTCCTCAAGAATCTGTGTCCCCTGCGGCTTCCACAGGACGCCGCAAACGACGTCGCACCAAGACGACCAAGAACCAGGAGGAAATCGAGAGCCAGAGGATGACCCACATTGCCGTCGAGCGTAATCGCCGCAAGAGGATGAATGAGTACTTGGCCGTGCTCCAATCCTTGATGCCTCCTTCTTATGTTCAAAGGGGTGACCAAGCTTCTATAATTGGAGGCGCCATTAACTTCGTAAAGGAGCTGGAACAACATCTACAGTCGATGCAGGGCCGAACCAAAACAAGACCACGCTCAGAACACAGCCCCTTTGCCGAGTTCTTCACGTTCCCACAGTACACAACGCCGGCAACTCAGAACAGCACCGGCTGTGCCGCCGCGAACGACCTCGCGATGGGACAAAACCGGAAGGAGGTCGGAGCGGCCGACATAGAAGTGAGCTTGGTGGACAGCCACGCCAACCTCAAGATTCTCTCCAAGAAACGGCCGTGCCAGCTTGTGAAGATGGTTGTTGGGCTTCAGAGTCTCAGGCTCTGCATTCTTCACCTTAACGTTACAACGACCCTCGACGATATGGTTTTGTACTCTGTTAGCGTAAAAGTTGAGGATGAGAGTCAGATGAACACAGTAGATGAAATTGCAGCCGCTGTGAATCAACTAATGCGCAGAATTCAAGAAGAAGCTGCTTTCTGTTGA 876 0.5091 MALEAVVFPQDPFNYCYMLGLGYGLEAEQERAFAGITGNANWDYSSVLQDVTESWDSSNSSPQESVSPAASTGRRKRRRTKTTKNQEEIESQRMTHIAVERNRRKRMNEYLAVLQSLMPPSYVQRGDQASIIGGAINFVKELEQHLQSMQGRTKTRPRSEHSPFAEFFTFPQYTTPATQNSTGCAAANDLAMGQNRKEVGAADIEVSLVDSHANLKILSKKRPCQLVKMVVGLQSLRLCILHLNVTTTLDDMVLYSVSVKVEDESQMNTVDEIAAAVNQLMRRIQEEAAFC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0386 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Lele28g0386 291 MobiDBLite consensus disorder prediction 54 90 - -
Lele28g0386 291 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Lele28g0386 291 SMART finulus 97 148 IPR011598 GO:0046983
Lele28g0386 291 Gene3D - 74 157 IPR036638 GO:0046983
Lele28g0386 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 158 IPR036638 GO:0046983
Lele28g0386 291 PANTHER MAX DIMERIZATION, MAD 57 288 - -
Lele28g0386 291 MobiDBLite consensus disorder prediction 54 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0386 Lele-ChrLele28 2373710 2374784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0386 1 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.882 1.40e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele28g0386 HLH 9.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0386 28 2373710 2374784 Lele02g0419 02 2420286 2424327 CCT
Lele28g0386 28 2373710 2374784 Lele04g0427 04 2522055 2524502 CCT
Lele01g0406 01 2385240 2386842 Lele28g0386 28 2373710 2374784 CCT
Lele02g0406 02 2363737 2365497 Lele28g0386 28 2373710 2374784 CCT
Lele03g0418 03 2390217 2392480 Lele28g0386 28 2373710 2374784 CCT
Lele04g0413 04 2451602 2452354 Lele28g0386 28 2373710 2374784 CCT
Lele25g0376 25 2289409 2290153 Lele28g0386 28 2373710 2374784 hybridization