Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0385 ATGGCGAGAATACACAGGAAACTCTTCCCAGCACTATCCAATACAAACCAAACACAAGATTGTCCTGAATTTTGCGACCCAGCTTGCCCTTACAGCTGCTATTCTTTCCCAGACTACTACTTCCCGCCACCGCCGCCTCCTCCGCCACCTTTTTCGGCCACCGATCATTCCGGTTCAGGCACTCATATCTCCTCCTATTTCATCATTCTCGCTTCTCTGTTCTCCGTTATTTTCCTTCTCCTGGGCTTGTACGTGATCAAAACCAAGTGTTACGCTAGTTGGTGTGGCTGGAGACACAGTGGATCCCAATCAGAGGCCTCAGACCAAGAGTTTCTTGATGACACCCAAGTTGATCACCCTGTCTGGTTTATAACCACCGCTGGTCTGCAACAGTCGATTATAAATTCTATCACAGTTTGTAAGTATAAAAGAGGTGAAGGGTTGATCGAAGGAACCGAGTGTCCAGTGTGTTTGAACGAATTTCGCGAAGATGAAACCTTGAGACTCTTGCCCAAATGCAGCCATGCCTTTCACATACCCTGTATTGACACTTGGTTGCGTTCTCATACCAATTGTCCTCTCTGTCGTGCTGGGATCGTCTCGAACAATGTTAGACCTGAGGCTGCCGTGTCGAATTTTGCTTCAACGGAGCTAAACTCTGACAATTTACGTAGGAACCAAGAGATTGAAACTGAGAATTCACCAAATGATGGCGAAGTAAACAACAATAGGATGGTGTTTGCAAATGGGGCATCTGGAAACAGAGCTGGAACAGTGGAAACCCAAGACTCGAACGGTAATTTGGTTTCAAAGGAGCAAGCGAATGTTATAGGCAATGGTCCAAAATTGGATCATGGGGTTTTGAACGAAGGAAAGCGAATCGAGATAAGGTCTATGTCTATGGATTATAGACTGGCAAATTCTGCTACTTCTGAGCCTGAAGAAAGCCATCCAGTGTTTAAAGAAATTCGGCGTTCCTCTGTTTCAAAATGTATGCACCTGGACCCTGTTCCGATGAAGAGGTCGTTCTCTTGTAGTGGAAGGATTCTATGGACCAGAGATCACAGGAATCTACATATAAGTCTTCCTTATTAG 1095 0.4539 MARIHRKLFPALSNTNQTQDCPEFCDPACPYSCYSFPDYYFPPPPPPPPPFSATDHSGSGTHISSYFIILASLFSVIFLLLGLYVIKTKCYASWCGWRHSGSQSEASDQEFLDDTQVDHPVWFITTAGLQQSIINSITVCKYKRGEGLIEGTECPVCLNEFREDETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVSNNVRPEAAVSNFASTELNSDNLRRNQEIETENSPNDGEVNNNRMVFANGASGNRAGTVETQDSNGNLVSKEQANVIGNGPKLDHGVLNEGKRIEIRSMSMDYRLANSATSEPEESHPVFKEIRRSSVSKCMHLDPVPMKRSFSCSGRILWTRDHRNLHISLPY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0385 364 CDD RING-H2_EL5_like 153 196 - -
Lele28g0385 364 Pfam Ring finger domain 153 196 IPR001841 -
Lele28g0385 364 PANTHER RING-H2 FINGER PROTEIN ATL16 49 344 IPR044600 GO:0016567|GO:0016740
Lele28g0385 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Lele28g0385 364 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Lele28g0385 364 SMART ring_2 154 195 IPR001841 -
Lele28g0385 364 SUPERFAMILY RING/U-box 147 201 - -
Lele28g0385 364 FunFam RING-H2 finger protein ATL54 129 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0385 Lele-ChrLele28 2368290 2369384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0385 1 200 C3H Transcription Factor Family AT1G72220 50.442 4.11e-64 208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0375 25 2284606 2285790 Lele28g0385 28 2368290 2369384 hybridization
Lele26g0390 26 2353657 2354739 Lele28g0385 28 2368290 2369384 hybridization