Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0384 ATGGATCTTCCTCAAGATATAGAGCTTTATCTCAAAGAATCCATCGACGACTCCTTGGGTCTTCCGATTTCGTTGCGGACTCTGGAATCCAAACTTCGAGCCTCCGAAGAGTCGCAACGGCTACTACGCCAGCAGCGCCTTTCTCTACTCTCCAAATTAAAGGAGAAAGATCAAATGATTGACCGCGTTAAGTCTGAAGCGACTATGAATGCTCAAGCTCTGAAGAAGTTCGTTGAGGAGAATCAGAAATTGGCTTCCGAGTGTGCAAATCTGTTAAGTCAATGTCATAAATGGGAAAGAGAATGCTCGCTCTATGATCGCGACAGGGAAGCGTTGATGGAATTTGGAAACGAAGCTGATGAACGGGCAAAGGAGGCAGAGTTCCGTGCACAACAGTTGGAAGAGGAGTTGGGAAAGTTATTGCAAGAATTGCAGCACTACAAGCATGAATACAATATGCGACCGGATGGTGCATCTTCTAATAGCACAGCAGTGGAAGCGAATTTACTTGAATCCCTTTTGTCAAAGGTTACAAATAAAGATGCTGCTTCTGCGTATACGTTCTTGGAGGCAAACAGTGGAAATGAAGCCTGTAAGAATTTGTTAACAATGTGGAACTGCCTTAAGCCATCGACGCAGAAAGTTTTGTCCCTTGTCGCTGAAGTGAAATCACTTGAGAAAGATAAGGAGCATCTCAGGATTAACCTTGACAGAGCTGAGGAGGAGGTCAAATTACTGTCGGATGAAAATAACATATTGAACAAGGAGAACAAAAGGCTACTGAAGCTAAAGGACAGGAACCATCTTGGTTCGGGTGGGAAACATAGTAGCAGTGCATCTGCCAAGTCAAACAAGAGAAAGTCTAGTCCCAAGACAAGTAGCTCCATTGAGAGAAAGATTGATTTTGAGGATATAGATACAGCAAGAACACCTTTGTCACCGTTACAAACTAACTCTCCCGACTCTAGAATGCATAAGAATTATGTATGTGTGAAGTTGAAGGGTCCTTCTTATCCTAGGAAATTGGCCCAGCACATTCACACAAGCTATCCGAACTATGGATGGATGGTTGATTCCCATCAACCTAAGAAAAGTCTCTTCTGTTCCCTTCTATCCCACACAATGGCACTCTCCAACGTCTTCATTCTGTGTGTATTCGTCGGAATCAACATGGCCCTGCCAGCGCTGGCCAAAGTATACACCGTTGGAGAATCCTCTGGTTGGGCGATCGGTGCTGATTATGGCACCTGGGCTAGTGGCATAACCTTCCAAGTCGGTGATTCTCTCGTGTTTAACTATGGAGCCGGGCACACAGTGGATGAAGTTAAAGAGAGTGACTACAAATCCTGCACCACCGGTAATTCACTTTCAACAGACAGCAGCGGAGCCACCACCATTGCCCTCAAGACCGCCGGCACTCACTACTTCATATGTGCAGTTCCTGGACATTGCAGTGGCGGCATGAAGCTTTCTGTTGATGTTAAGGCTGGAAAAGCCTCCGCTCCCTCTGCAACGCCTTCCTCCGGGAAGGGCTCGCCTGCCAGTGACACCCCACCTGCCACAACCGCCACTCCGTCCTCCTCCTCCTCCACCACCACCCCATCCTCTACGGCATCGTCTTCTTCGGCCACTAGCCTTTCGCCGGTTGTTTCCATACTGACTGTTTCTTGGGTTTCATACTGTGTGTTGCGACTGCTATGA 1701 0.4715 MDLPQDIELYLKESIDDSLGLPISLRTLESKLRASEESQRLLRQQRLSLLSKLKEKDQMIDRVKSEATMNAQALKKFVEENQKLASECANLLSQCHKWERECSLYDRDREALMEFGNEADERAKEAEFRAQQLEEELGKLLQELQHYKHEYNMRPDGASSNSTAVEANLLESLLSKVTNKDAASAYTFLEANSGNEACKNLLTMWNCLKPSTQKVLSLVAEVKSLEKDKEHLRINLDRAEEEVKLLSDENNILNKENKRLLKLKDRNHLGSGGKHSSSASAKSNKRKSSPKTSSSIERKIDFEDIDTARTPLSPLQTNSPDSRMHKNYVCVKLKGPSYPRKLAQHIHTSYPNYGWMVDSHQPKKSLFCSLLSHTMALSNVFILCVFVGINMALPALAKVYTVGESSGWAIGADYGTWASGITFQVGDSLVFNYGAGHTVDEVKESDYKSCTTGNSLSTDSSGATTIALKTAGTHYFICAVPGHCSGGMKLSVDVKAGKASAPSATPSSGKGSPASDTPPATTATPSSSSSTTTPSSTASSSSATSLSPVVSILTVSWVSYCVLRLL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0384 566 MobiDBLite consensus disorder prediction 272 290 - -
Lele28g0384 566 Gene3D - 396 501 IPR008972 -
Lele28g0384 566 FunFam Blue copper 396 500 - -
Lele28g0384 566 MobiDBLite consensus disorder prediction 501 543 - -
Lele28g0384 566 MobiDBLite consensus disorder prediction 263 296 - -
Lele28g0384 566 Coils Coil 74 101 - -
Lele28g0384 566 PANTHER EARLY ENDOSOME ANTIGEN 1 327 - -
Lele28g0384 566 MobiDBLite consensus disorder prediction 500 543 - -
Lele28g0384 566 CDD Phytocyanin 398 494 - -
Lele28g0384 566 Coils Coil 215 266 - -
Lele28g0384 566 Coils Coil 116 150 - -
Lele28g0384 566 Pfam Plastocyanin-like domain 408 488 IPR003245 GO:0009055
Lele28g0384 566 ProSiteProfiles Phytocyanin domain profile. 398 496 IPR003245 GO:0009055
Lele28g0384 566 SUPERFAMILY Cupredoxins 397 494 IPR008972 -
Lele28g0384 566 ProSitePatterns Type-1 copper (blue) proteins signature. 472 488 IPR028871 -
Lele28g0384 566 Coils Coil 25 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0384 Lele-ChrLele28 2360061 2365021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0384 396 534 Miscellaneous Gene Families AT1G22480 45.070 2.19e-33 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0405 01 2380816 2383120 Lele28g0384 28 2360061 2365021 CCT
Lele02g0404 02 2358552 2360371 Lele28g0384 28 2360061 2365021 CCT
Lele03g0417 03 2386616 2388460 Lele28g0384 28 2360061 2365021 CCT
Lele04g0411 04 2446930 2448750 Lele28g0384 28 2360061 2365021 CCT
Lele25g0374 25 2273714 2281875 Lele28g0384 28 2360061 2365021 hybridization
Lele26g0389 26 2345768 2350798 Lele28g0384 28 2360061 2365021 hybridization