Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0372 ATGGCTAATCACCCCTACTTGGGCGACACCACATTCACCAAAGTGTTTGTGGGAGGACTAGCTTGGGAGACACCCACTCAAGAATTTCGTAAATATTTCGAGCAGTTCGGTCATATTCTTGAAGCTGTCATCATCAATGATAAGCATACTGGAAAGTCTAAAGGCTATGGTTTCGTCACTTTCCGTGATCCAGACTCAGCAAGAAAAGCCTGTGCGGATCCCAAACCAATGATATATGGAAGACGAGCAAATTGCAATATTGCTTCTCTAGGACGGCCTTCTTCATCTCCTCGAGGAACGAATATATCAGTGCAAGACGGTCGTAAGGCAGTCACGGTGCGAGAAACGCCGGCCTACAATGGACTTCCGGAAGCGGCAGCGCCACCTTCTCTGATGCACTCAGCAGCGTATAGATCATGCTGTCCAACCCACAATACCATCAACAAGTCTATGGGCGATCATCTTCATCATATTACTATGGCAGATCACTACACATATTTTCGACGGCTATGGGACTCAAAAGATGGTAAACTAAACTTCATTCAGGTTTCAGACAATCTTCGTTCTCTATTCCTATTCTTCCAAGGAATGACTCGTGTTCAGGCAAAGTTGAACAATTAG 621 0.4525 MANHPYLGDTTFTKVFVGGLAWETPTQEFRKYFEQFGHILEAVIINDKHTGKSKGYGFVTFRDPDSARKACADPKPMIYGRRANCNIASLGRPSSSPRGTNISVQDGRKAVTVRETPAYNGLPEAAAPPSLMHSAAYRSCCPTHNTINKSMGDHLHHITMADHYTYFRRLWDSKDGKLNFIQVSDNLRSLFLFFQGMTRVQAKLNN 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0372 206 SUPERFAMILY RNA-binding domain, RBD 12 106 IPR035979 GO:0003676
Lele28g0372 206 Coils Coil 197 206 - -
Lele28g0372 206 PANTHER BOULE-RELATED 8 132 IPR037366 -
Lele28g0372 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 109 IPR000504 GO:0003723
Lele28g0372 206 CDD RRM_RBM24_RBM38_like 13 88 - -
Lele28g0372 206 SMART rrm1_1 14 86 IPR000504 GO:0003723
Lele28g0372 206 Gene3D - 3 104 IPR012677 -
Lele28g0372 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 72 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0372 Lele-ChrLele28 2285038 2288031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0372 9 89 C2H2 Transcription Factor Family AT2G19380 39.506 1.80e-15 72.4