Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0358 ATGTTCAAGACACCTGAGAAAAATATGAGCAATGCAGAGAACACCATAGAGAGAGATGAAGTGTTGGGAACGTGGTGGAATGGATTTCCAAACACATCATATCCCAATCTTCATCATTGCCAGCGTTACAATGAGCATTTGGCGTGTAACTCCCCTGTATGGAGGGTCTCTCACACATCACATTCTCCTCCGTTAACTTCTTTAGCTGACGGGCTTCATGTTTCTTCCCACAGTTCCTCATACTCAGCTCCATTTCAGGACAGCAAGCATCTAACACCCCACGATCACCACTCAACTAAATTGTCGTTGGACCCCGATTCATCGGATTTCCATATCGGGAAGAATATCATGGATAATCAAGTGGTTGATCTGGACCTGTCTCGTGATTTCTATAGAATGAATATTATAGACGGACAGGGAAATGGTAACAAAACAAAGGCACCGGAAGCGGACTCCTACGGATTTGGACTTGAAGCTTTTTCTTTCGATATAAATATTCCCGGCGTTAATGAAACACGGAGCTCCTATGGAGATTTTTGCAATGAGGTTCCCGCACCTAATTATGAGTGTGTCTCATCGTCTACTTGGGGAGTTTCACCGAGTATGGTCGCTAATATGAAGTGGGCTAACCATGCCTCGGAGAAAGGATACACTCCTTCCCTCTCACATGGTCAGTCCAGCGCTTTGAATTTGTGCTCTGGTTGGAACATGAACCAAACATATCATCAATTGGAGCACAGCAAGAAACAGGGGAGCAGTAGCTATGATGGAGAAATTCAACTGCAGAAGCCATCTATCATCAATCCCTTCCTTTGTGATGGTTTAACTAGCTCACAACTTTGTGGAGTGGATTATGATGGAAGTAGGAGTGTCGAAAACCCCTTAAGATTCTCTCAAATTATGCACCCCAAGCTAGCTTCACTTCAGGATACAAACGAAAAAACAAGGGGAATTGCTAACTTTGAGCTGCCTGAATTTCTCTCGTCCAGAAGAGCTGGTGGCAATCCAATGGCATTTCGATGTGATAATAGTTTTATCATACAAGGAAAAGATATAAATTATTGCATAGACAAAGGATACAATTCTTTGAGGGTTAACAAAAAGAATTCCCTCAATGAGAGTGCATTTGCAACTGCCGGGGAGAAAGCTTCTAAACACGATTCTTATACTCCTTGTAGTCAAATTTGTGGGAACAATGGCAGTTTTGTTGGCGATTACCCACTGCTTTCACTACTGAATTTATGTTCTTTGGCTGAGTGCCAAGGTTACATTTACTTTCTGGCAAAGGATCAGAACGGATGTCGCTTCCTACAAAGGATGGTTGATAAGGGAAACTCTAAGGAAATGCATATAGTATTTGAGGGAATCATAGATAATGTTGTTGAACTCATGATGGATCCTTTTGGTAACTATCTTGTGCAGAAGTTGCTGGATGTGTGCAGAGAAGAGCAGAAATTGCAGATTGTTTCCATGGTGACTAAAGAACCAGGGCAGCTGCTCAGAATATCTTTAAACACGCATGGCACACGGGTCATACAGAAGTTGATTGGCACACTCAACTCTAGGAAACAGATTTCATTAGTGAAGTCAGCCCTTCAAGCAGGTTTTATTGATCTTATTAAGGATCTGAATGGAAATCATGTGATAACACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATGAGTTTATTTTTTATGCTGCCGCAAAGTTTTGTGTTGACATAGCTACTCATCGACATGGATGTTGTGTATTGCAACGTTGCATTGATCATTCAATCGGCAAATATCGAGATAAGCTGGTCACAGAAATATGTAGACATGGGCTTCTCCTTGCTCAAGATCCTTTCGGAAATTATGTTGTTCAGTATATAATAGAGATGGAGATCCCAACTGCCTCAACCAAGCTGACTTCTCAGTTCAAAGGGAACTATGTAAATCTGTCCAAGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTTAAGCATATTCCAGATAGCAGATCAAGGATCGTCCGAGAAATGCTGTCTCAACCTCACTTCGAGCAGCTGTTGCAAGATCCATATGCCAATTATGTCATTCAGTCTGCTCTAACATTGACAAAGGGTTCACTTCATACATCTTTGGTTGAAGCAGTTCGTCCTTACAAAATCTTGCGCACCAGCCCGTATTGCAAGAGGATTTTCTCGGGAAATCTTCTCAAGAAGCAAGCTTGGTTACCAGATATGCTTCTGTATGATGCTGATGATGCATCATCCTGTATTGTCTTTCGTTGTGGCGTCCTATGCATATTTTAA 2298 0.4178 MFKTPEKNMSNAENTIERDEVLGTWWNGFPNTSYPNLHHCQRYNEHLACNSPVWRVSHTSHSPPLTSLADGLHVSSHSSSYSAPFQDSKHLTPHDHHSTKLSLDPDSSDFHIGKNIMDNQVVDLDLSRDFYRMNIIDGQGNGNKTKAPEADSYGFGLEAFSFDINIPGVNETRSSYGDFCNEVPAPNYECVSSSTWGVSPSMVANMKWANHASEKGYTPSLSHGQSSALNLCSGWNMNQTYHQLEHSKKQGSSSYDGEIQLQKPSIINPFLCDGLTSSQLCGVDYDGSRSVENPLRFSQIMHPKLASLQDTNEKTRGIANFELPEFLSSRRAGGNPMAFRCDNSFIIQGKDINYCIDKGYNSLRVNKKNSLNESAFATAGEKASKHDSYTPCSQICGNNGSFVGDYPLLSLLNLCSLAECQGYIYFLAKDQNGCRFLQRMVDKGNSKEMHIVFEGIIDNVVELMMDPFGNYLVQKLLDVCREEQKLQIVSMVTKEPGQLLRISLNTHGTRVIQKLIGTLNSRKQISLVKSALQAGFIDLIKDLNGNHVITRCLQCLSCQDNEFIFYAAAKFCVDIATHRHGCCVLQRCIDHSIGKYRDKLVTEICRHGLLLAQDPFGNYVVQYIIEMEIPTASTKLTSQFKGNYVNLSKQKFSSHVVEKCLKHIPDSRSRIVREMLSQPHFEQLLQDPYANYVIQSALTLTKGSLHTSLVEAVRPYKILRTSPYCKRIFSGNLLKKQAWLPDMLLYDADDASSCIVFRCGVLCIF 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0358 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 562 602 IPR001313 GO:0003723
Lele28g0358 765 SMART pum_5 419 454 IPR001313 GO:0003723
Lele28g0358 765 SMART pum_5 676 711 IPR001313 GO:0003723
Lele28g0358 765 SMART pum_5 603 638 IPR001313 GO:0003723
Lele28g0358 765 SMART pum_5 531 566 IPR001313 GO:0003723
Lele28g0358 765 SMART pum_5 455 490 IPR001313 GO:0003723
Lele28g0358 765 SMART pum_5 567 602 IPR001313 GO:0003723
Lele28g0358 765 SMART pum_5 639 673 IPR001313 GO:0003723
Lele28g0358 765 SMART pum_5 494 529 IPR001313 GO:0003723
Lele28g0358 765 Pfam Pumilio-family RNA binding repeat 643 674 IPR001313 GO:0003723
Lele28g0358 765 Pfam Pumilio-family RNA binding repeat 499 520 IPR001313 GO:0003723
Lele28g0358 765 Pfam Pumilio-family RNA binding repeat 680 698 IPR001313 GO:0003723
Lele28g0358 765 Pfam Pumilio-family RNA binding repeat 572 605 IPR001313 GO:0003723
Lele28g0358 765 Pfam Pumilio-family RNA binding repeat 424 457 IPR001313 GO:0003723
Lele28g0358 765 Pfam Pumilio-family RNA binding repeat 610 626 IPR001313 GO:0003723
Lele28g0358 765 Pfam Pumilio-family RNA binding repeat 537 565 IPR001313 GO:0003723
Lele28g0358 765 Pfam Pumilio-family RNA binding repeat 459 491 IPR001313 GO:0003723
Lele28g0358 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 603 638 IPR001313 GO:0003723
Lele28g0358 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 491 529 IPR001313 GO:0003723
Lele28g0358 765 Gene3D - 412 736 IPR011989 -
Lele28g0358 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 455 490 IPR001313 GO:0003723
Lele28g0358 765 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 209 729 - -
Lele28g0358 765 CDD Pumilio 420 730 IPR033712 GO:0003723
Lele28g0358 765 MobiDBLite consensus disorder prediction 79 100 - -
Lele28g0358 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 416 454 IPR001313 GO:0003723
Lele28g0358 765 FunFam Pumilio homolog 9 410 737 - -
Lele28g0358 765 SUPERFAMILY ARM repeat 417 729 IPR016024 -
Lele28g0358 765 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 391 736 IPR033133 GO:0003723
Lele28g0358 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 674 711 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0358 Lele-ChrLele28 2192375 2196859 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0374 01 2170894 2175718 Lele28g0358 28 2192375 2196859 CCT
Lele02g0369 02 2143236 2150210 Lele28g0358 28 2192375 2196859 CCT
Lele03g0380 03 2192833 2203776 Lele28g0358 28 2192375 2196859 CCT
Lele04g0377 04 2228733 2239314 Lele28g0358 28 2192375 2196859 CCT
Lele25g0342 25 2089314 2094486 Lele28g0358 28 2192375 2196859 hybridization
Lele26g0360 26 2171766 2176224 Lele28g0358 28 2192375 2196859 hybridization