Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0354 ATGGCGGGGAAGGTCAAAACCGTGGTGGAGAATGATCTGGGCTGTGGTTTTGTGGGAAGGCTATCCCTTCTTAGAAGCCACCTGTTGAGAAAATCATCCGTCTATTCACTATCCTTGAAATCTGCCGACAATGTACAGAGCAAGGAGAGCAAAAAGGATTCCAAAAGGCCTCCAAATCATGAATCCAAGGGCGCGCCAAATATCCCTATCGAGTCTCAAAAACCAGATTCGGATCAAAAGAAGCCCAGAAAGAGCATCTCCGGTCATCAGAACAGTCAGAACCGGAGACCTTCCGATGATGCCAGAAGCTCAACATCATCCTCTGGTAATTCAATCAATACAAGGAATGACGAGAACAAATTACCGAGGGAGCCCGTCGGAAATTCTCTGGAGCTTGCTAGGATAAGCACTAGTCACCAGCGAGACAACGAGCATAAAGCCACAGTTAACTTGAAACTTACTGGGAATTTGCTTGCTAGTAACAGCCCCAGAACTAGTATTTCAAAGAAAGTGAAATCCGTTCCCAAGATTAAAGAGTTGAATTCTGTTACTAGTTCTCACAATAACGCCGGGATGGGGAACATCATGAGGAAGAACAGCGATGAACTTGTGCAACTGCGGAGACAGAGGATCCGAGGAGACCCTGAGGTGTTGAAGACCGAGGGAAACGAAGCCTACAAACAGGGGAAATTCGAAGAAGCTTTGAGTCTGTATGACCGAGCCATTCATATTAATTCAAATAAGGCGACTTATTATTGCAATAAGAGTGCAGCTCTAATGGGCCTAGGCCTACTTCCAGAAGCACTGGTCGAATGCCAGGAAGCTATTCGCCTGGAGCCTTCTTATATAAGAGCTCACCACCGTTTGGCAGCGATATATCTCAGACTGGGAGAAGCAGAGAAGGCGATGCGCTGCAGCAATTCAACTCCATATTCGGATTCTGTACTTTCATTCCAAGCTCAGGCTCTTCAAAATCACCTTAAAAAATGCCTTGAAGCTCGGGAAGTGAATGAGTGGAACACTATACTGAAGGAAACACAAGCTGCGATATCATTATGTGCTGATTCAGCTCCGCAGGTCTATGCTCTACGAACAGAAGCCTTACTGAAGCTCCTGAGACATGAAGAGGCATCTTCTACCTACGAAAAGATGCCCAAATTTGAACTTGATTGGTGTACTAAGATTTTTGGCTTGCCGTGTACTGCATACTTGTTGGTAGTAGGCGCTCAAGTTCACTTGGCAGCCGGCAGGTTCGACGATGCAGTGACATCTGCTCAGCAAGCAGCTGAACTTGATCCAACCAACAAAGAGGTGAACGCAGTGATAAGAAGGACGAGAGCAGTGAGATCAGCGAGAATGAGTGGGAATTTACTGTTCAAGGCTTCCAAGTTTATGGAAGCATGTGGGGTTTACAATGAAGGGCTAGAACATGATCCATTCAACTCAGTGCTGCTATGCAACAGAGCAGCATGCCGTTCTAAGCTGGGTCAATGCGAGAAAGCAATTGAAGATTGTAACGCAGCCCTTTCAATTCAGCCTTATTACATCAAGGCAAGGTTACGGAGGGCAGATTGCAATGCTAAGTTGGAAAGATGGGGAGCTGCCATTCAAGACTACGAAATGCTGATGAGAGAAAAGCCAGGGGATGAGGAGGTGGCGAGGGCTTTGTTTCAGGCCCAACTTCAACTCAAGATGATGCGAGGAGAAGATATTAAAGATTTGAAATTCGGTTGCAATTTGGTTTCCATTTCAAGCAATGATCGCTTTAGACACTATGTGACCTTGCCTGGTATGTCCGTGGTTCTGTTTTGCAACAAGGCAACCCACAAGCAAGTATTGCAGGTGTTGGAGAAAACATGCAAGAGATTTCCATCTGTTCATTTCCTCAAGGTGGAGATTGAAGATCATCCCTACTTGGCAAAATCAGAAGGCGTGAGCTCTGTCCCAGCCTTCAGAATATACAAGAACGGATCAAGGGTCAAAGAGATTCCAGGCAACAAACACGAGTTGTTAGAAAGATCGGTTAAACTGAGGAGATTCCAAGATGAGCTGAGGACAAGCACCGGTGCATTCACAGAATACTTTCTTCAGAGGTTTGACATAAAGCCTGTGAGATTGGAGTCCCCTCTGCCGGGGAGCCTCAGCAAGCAATCTGCTCGTCCTTTAGCCCATAGAGAACGAGTGAAACAGGAAAATATCAAAAGAGGGATGGGGGCCTCCTTTGGAGATTGGCAAAGTGCTCTCCTCACCTTCTATGATAATGACACAGCCCAACTGCCTCATCACACTTCCACTTCTGCACCAGTTGTTCTTTTTGTCCTCACATTTTCGTTTCCTCCTGCCAAAGCTCGGGCATCTTATCTCACTCCATAG 2373 0.4619 MAGKVKTVVENDLGCGFVGRLSLLRSHLLRKSSVYSLSLKSADNVQSKESKKDSKRPPNHESKGAPNIPIESQKPDSDQKKPRKSISGHQNSQNRRPSDDARSSTSSSGNSINTRNDENKLPREPVGNSLELARISTSHQRDNEHKATVNLKLTGNLLASNSPRTSISKKVKSVPKIKELNSVTSSHNNAGMGNIMRKNSDELVQLRRQRIRGDPEVLKTEGNEAYKQGKFEEALSLYDRAIHINSNKATYYCNKSAALMGLGLLPEALVECQEAIRLEPSYIRAHHRLAAIYLRLGEAEKAMRCSNSTPYSDSVLSFQAQALQNHLKKCLEAREVNEWNTILKETQAAISLCADSAPQVYALRTEALLKLLRHEEASSTYEKMPKFELDWCTKIFGLPCTAYLLVVGAQVHLAAGRFDDAVTSAQQAAELDPTNKEVNAVIRRTRAVRSARMSGNLLFKASKFMEACGVYNEGLEHDPFNSVLLCNRAACRSKLGQCEKAIEDCNAALSIQPYYIKARLRRADCNAKLERWGAAIQDYEMLMREKPGDEEVARALFQAQLQLKMMRGEDIKDLKFGCNLVSISSNDRFRHYVTLPGMSVVLFCNKATHKQVLQVLEKTCKRFPSVHFLKVEIEDHPYLAKSEGVSSVPAFRIYKNGSRVKEIPGNKHELLERSVKLRRFQDELRTSTGAFTEYFLQRFDIKPVRLESPLPGSLSKQSARPLAHRERVKQENIKRGMGASFGDWQSALLTFYDNDTAQLPHHTSTSAPVVLFVLTFSFPPAKARASYLTP 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0354 790 SMART tpr_5 249 282 IPR019734 GO:0005515
Lele28g0354 790 SMART tpr_5 516 549 IPR019734 GO:0005515
Lele28g0354 790 SMART tpr_5 402 435 IPR019734 GO:0005515
Lele28g0354 790 SMART tpr_5 215 248 IPR019734 GO:0005515
Lele28g0354 790 SMART tpr_5 482 515 IPR019734 GO:0005515
Lele28g0354 790 SMART tpr_5 448 481 IPR019734 GO:0005515
Lele28g0354 790 MobiDBLite consensus disorder prediction 40 128 - -
Lele28g0354 790 MobiDBLite consensus disorder prediction 86 116 - -
Lele28g0354 790 SUPERFAMILY TPR-like 453 564 IPR011990 GO:0005515
Lele28g0354 790 SUPERFAMILY Thioredoxin-like 564 668 IPR036249 -
Lele28g0354 790 Gene3D Glutaredoxin 579 681 - -
Lele28g0354 790 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Lele28g0354 790 Pfam Tetratricopeptide repeat 409 481 - -
Lele28g0354 790 SUPERFAMILY TPR-like 214 437 IPR011990 GO:0005515
Lele28g0354 790 Gene3D Tetratricopeptide repeat domain 214 567 IPR011990 GO:0005515
Lele28g0354 790 Pfam Thioredoxin 610 671 IPR013766 -
Lele28g0354 790 MobiDBLite consensus disorder prediction 45 60 - -
Lele28g0354 790 CDD TRX_family 589 672 - -
Lele28g0354 790 Pfam TPR repeat 222 263 - -
Lele28g0354 790 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 38 676 IPR044534 -
Lele28g0354 790 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0354 Lele-ChrLele28 2167748 2172513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0354 216 373 U-box Gene Family AT3G07370 26.667 2.48e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0338 25 2066622 2069137 Lele28g0354 28 2167748 2172513 hybridization
Lele26g0355 26 2147070 2149598 Lele28g0354 28 2167748 2172513 hybridization