Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0352 ATGTCGATTTCCAATTCACCTGCGTTGCGCGGAGCAGGAGTCCCTGAATCCATGGCTCTGCTTCGTGAGTTTCTGGGCACATCCCAGAGAAAACTCATGAAGAGGCTTAAGGACGAAGAAGGCAAAGGAAGAGCTAAAGTTACCTCTTGGGTTGATTCAATGAGAGCTTCCTCTCCACCCCGTGTCAAATCCACCGTTCATGCTTGTGAAAACTGTGACATTAGTTCTGAGATTCTTCGTCATCCTTCAGCGCTCAACGTGTTTGATCAGATAATATATAACGCAAAAGGAAAAAAGATCATAACCTTTCTTGACTACGATGGAACTCTCTCCCCGATTGTTGCAGACCCCGAGAAAGCATTCATGAGTGACAAGATGAGAGAAACGGTGAAGGACATAGCCAGATATTTTCCCACAGCAATCGTGACTGGGAGGTGCATAGACAAGGTATATAACTTTGTAAGGCTGGCAGAACTGTACTACGCAGGAAGCCATGGCATGGACATCAAGGGGCCAACGAAAACACGAAACTCTGAGAAGGGTAAACGAGCAGTCCTCTTCCAACCTGCTAATCAGTTCTTGCCCATGATCGACGAGGTGTATAAAATCTTGGTAGAAAAAACAAAGTCTGTTCCCGGGGCCATGGTAGAGAATAACAAGTTTTGCTTGTCTGTTCACTTCCGCTGTGTTGACGAGAAGAATTGGGGTGCATTGGCAGAGCAAGTAAGATCAGTGCTCAACGATTATCCAAGACTTAGACTTACCCAAGGAAGGAAAGTTTTAGAGATCCGTCCAAACATCAAGTGGGACAAGGGCAAAGCTCTCGACTTTTTGTTGCGGTCACTCGGATATGGAAATTCTAAAGACGTGTTCCCGATTTATATCGGTGATGACCGAACTGACGAGGATGCTTTTAAGGTTTTACGCAACAGAGGTCAGGGGATTGGAATTTTGGTTTCTAAAGTTCCAAGAGAAACAGAGGCTTCCTACACCCTGCAAGATCCATCAGAAGTTGAGCAGTTTCTACGGGGTTTGGTGGAGTGGAAGAGAAGGAGGGTGAATCCAACAACTAGCGTAGAGAACTGTAGATTGTAG 1095 0.4566 MSISNSPALRGAGVPESMALLREFLGTSQRKLMKRLKDEEGKGRAKVTSWVDSMRASSPPRVKSTVHACENCDISSEILRHPSALNVFDQIIYNAKGKKIITFLDYDGTLSPIVADPEKAFMSDKMRETVKDIARYFPTAIVTGRCIDKVYNFVRLAELYYAGSHGMDIKGPTKTRNSEKGKRAVLFQPANQFLPMIDEVYKILVEKTKSVPGAMVENNKFCLSVHFRCVDEKNWGALAEQVRSVLNDYPRLRLTQGRKVLEIRPNIKWDKGKALDFLLRSLGYGNSKDVFPIYIGDDRTDEDAFKVLRNRGQGIGILVSKVPRETEASYTLQDPSEVEQFLRGLVEWKRRRVNPTTSVENCRL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0352 364 TIGRFAM T6PP: trehalose-phosphatase 98 346 IPR003337 GO:0003824|GO:0005992
Lele28g0352 364 FunFam Trehalose 6-phosphate phosphatase 196 354 - -
Lele28g0352 364 SUPERFAMILY HAD-like 103 348 IPR036412 -
Lele28g0352 364 CDD HAD_TPP 103 338 - -
Lele28g0352 364 FunFam Trehalose 6-phosphate phosphatase 190 266 - -
Lele28g0352 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 38 353 IPR044651 GO:0004805|GO:0005992
Lele28g0352 364 Pfam Trehalose-phosphatase 103 336 IPR003337 GO:0003824|GO:0005992
Lele28g0352 364 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 103 310 IPR006379 -
Lele28g0352 364 FunFam Trehalose 6-phosphate phosphatase 100 186 - -
Lele28g0352 364 Gene3D - 190 266 - -
Lele28g0352 364 Gene3D - 103 332 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0352 Lele-ChrLele28 2143541 2145360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0352 92 345 Trehalose Biosynthesis Gene Families AT1G70290 27.306 5.37e-11 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0368 01 2127940 2140654 Lele28g0352 28 2143541 2145360 CCT
Lele02g0362 02 2098539 2111002 Lele28g0352 28 2143541 2145360 CCT
Lele03g0374 03 2143212 2155455 Lele28g0352 28 2143541 2145360 CCT
Lele04g0370 04 2182864 2195329 Lele28g0352 28 2143541 2145360 CCT
Lele25g0336 25 2045115 2046978 Lele28g0352 28 2143541 2145360 hybridization
Lele26g0353 26 2124665 2126556 Lele28g0352 28 2143541 2145360 hybridization