Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0349 ATGGATTTCTACGGTGGCAGACAACTTCATTCAGATCCTTTCAGGGGTGAGTTGATGGAAGTACTTGAACCTTTTATGAAATGTCCTTCCACAACTCCCTCTCCCTCTGCAGCCTCTTCCCCTTGTTCAAATTCCTCCCTACCTTCTCCATCTTACTCTCCTTCTCCATCAGTCCCTTCACAGCCCAGTTTTCTGGCAGACGGTTGCTCCACATCGATGACCCCTATATTTAACGATGGGTTATCGAGCAGCCTCAACGCCATCGGCTTCGGGCAACCGAGCTCTGTTATTGGGCTTAACAACCTAACCCCATCTCAGATTTACCAGATCCAATCTCAGATCCAGCTCCAGAACCATCAAAACCTTTGCTGGCAGCAAAATAGTGCCTCTGCCACCCTTGGCTTCTTGAGTCCCAAACCTATTCCCATGAAGCATACGGGTGTGCCTCCCAAACCCACGAAGCTTTACCGAGGTGTCAGGCAGCGTCACTGGGGGAAGTGGGTTGCCGAGATCAGACTCCCTAAGAACCGCACACGACTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCCTAGCCTATGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCCAGGCTCAACTTTCCCAACCTGCGACACCAAGGCTCTTGTGTCGGCGGCGAATTCGGGGAGTACAAGCCACTCCATTCATCTGTGGACGCCAAGCTTCAAGCGATCTGCGAAAGTTTGGCCGATCTGCAGAAACAGGGGAAGTCAGCGAGGCCGACGGGCTCATCCAAGAGGTCCGGTGGGCGGTCAAAAGCTGGTTCGAAAGATGCTCAGCCGGTGGCCAGCGAAACCGATGTGAAGGTGGAAAGCTCCTCTTCACCGGCGATGACGGAGAGCGAGGGATCCGGGGGTTCTTCTCCCCTGTCGGATCTGACTTTCGCGGACGTGAGCGAGCCACAGTGGGACGGGGCTGTGGATAATCTGAATCTGCAGAAGTACCCTTCTTATGAGATTGATTGGGCATCTCTGTGA 1029 0.5423 MDFYGGRQLHSDPFRGELMEVLEPFMKCPSTTPSPSAASSPCSNSSLPSPSYSPSPSVPSQPSFLADGCSTSMTPIFNDGLSSSLNAIGFGQPSSVIGLNNLTPSQIYQIQSQIQLQNHQNLCWQQNSASATLGFLSPKPIPMKHTGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLQAICESLADLQKQGKSARPTGSSKRSGGRSKAGSKDAQPVASETDVKVESSSSPAMTESEGSGGSSPLSDLTFADVSEPQWDGAVDNLNLQKYPSYEIDWASL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0349 342 MobiDBLite consensus disorder prediction 250 316 - -
Lele28g0349 342 FunFam Ethylene-responsive transcription factor 2 154 213 - -
Lele28g0349 342 Gene3D AP2/ERF domain 155 213 IPR036955 GO:0003700|GO:0006355
Lele28g0349 342 MobiDBLite consensus disorder prediction 283 312 - -
Lele28g0349 342 MobiDBLite consensus disorder prediction 29 51 - -
Lele28g0349 342 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 7 342 - -
Lele28g0349 342 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Lele28g0349 342 PRINTS Ethylene responsive element binding protein signature 178 194 IPR001471 GO:0003700|GO:0006355
Lele28g0349 342 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700|GO:0006355
Lele28g0349 342 SMART rav1_2 155 218 IPR001471 GO:0003700|GO:0006355
Lele28g0349 342 CDD AP2 154 214 IPR001471 GO:0003700|GO:0006355
Lele28g0349 342 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Lele28g0349 342 ProSiteProfiles AP2/ERF domain profile. 155 212 IPR001471 GO:0003700|GO:0006355
Lele28g0349 342 MobiDBLite consensus disorder prediction 252 267 - -
Lele28g0349 342 MobiDBLite consensus disorder prediction 29 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0349 Lele-ChrLele28 2126257 2127285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0349 16 342 AP2-EREBP Transcription Factor Family AT1G78080 55.588 7.70e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele28g0349 AP2 7.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0359 02 2081498 2084832 Lele28g0349 28 2126257 2127285 CCT
Lele25g0334 25 2028599 2029663 Lele28g0349 28 2126257 2127285 hybridization
Lele26g0350 26 2107977 2109005 Lele28g0349 28 2126257 2127285 hybridization