Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0343 ATGCCAGCCATTAGCTACTCTAAAATATACTGTGATCTTTTTTTTTTCCTACATCATAGGTGGAAGTCTGGTTTAACTTGTTCAATGGATCATCAAGATGATGAAAATCTCCAAACAAAAGAGGTGCCTCTATCTTCACATGATCAGGCGCCATATATCCATAGGGTGGGAAGTCCTCAGAGACAGAACTTATTCAAGGACTTCCAATCCACTTTGAAAGAAACATTATTTGCGGGTGATCCTCTACGTTCCTTCAAAGATCAGCCTATGTCCCCTCAAGTTGCCTACATTTTTCCATTAGATGTTGGATTCAGGGTTTTGCTTTCCTTTTTGTTCACAGACTCCAGCTTTGTTCCACCTCTTGTTTATGCTGTCATGGGTAGTTCCCGTGATATTGCAATAGGACAAGTAGCTGTGGTTTCTCTCTTGCTGGGGAGCTCGCTTCAGAATGAGATTGATCCTGTGACAAATGCAGCCGAATATCGGCGGCTTGCTTTTACTGCCACTTTTTTTGCAGGGATCAGCCAGGCTGCTCTTGGGGTTTTCAGGTTAGGTTTCTTAATTGACTTCCTTTCCCATGCTGCTATTGTTGGTTTCATGGGGGAGCTGCTATCACAATTTCCCTTCAACAGCTTAAGGGGAAAGAAGGCCAAGAAATTGTTCTGGATCCCAGCAATTGCCCCATTGATATCTATTGTGTTGTCCACTTCTCCGGTCTATTTAACTCGTGAAGACAAGCAAGGTGTTGAAATTGCGAGACACATAGAAAAAGGGATCAATCCTTCATCTGTTCATGAAATATACTTTACTGGTGATTACCTACGAAAAGGTTTCCGAATCGGCATCGTGGCTGGTATGATAGCGTTGACGGAAGCCACAGCAATTGGGAGAACATTTGCTTCCATGAAGGATTATCAGATAGATGGAAACAAGGAAATGGTGGCTTTAGGAGCTATGAATGTTGTCGGTTCGTTGACTTCTTGCTATGTGGCAACGGGTTCTTTCTCTCGGTCAGCGGTAAATTACATGGCAGGTTGCCAAACTTCGATTTCTAATGTTGTGATGTCCTTTGTCGTGTTTTTAACTCTGAAATTCATCACACCTGTTTTCAAGTACACACCAAACGCCATTCTTTCTGCCATCATCATATCAGCTGTTATCAACCTTGTGGACTTCAAGGCAGCAGTTTTAATATGGAAGATTGATAAATTTGATTTCGTTGCTTGCATGGGAGCTTTTTTTGGTGTTGTTTTTTGCTCGCTTGAGATTAGGACTTCTGATTGCCCTAAGAAAGCTAAGACTCCATCATCAATGTCAAAATTTATATGTATCGTTTACACGATACTGAGATGGCTGATGGATGAGGAAGAGAAAAGTATAGAAGAGTACCGAACAAGAATCCAATTTTTGGTAGTCGAAATGTCACCCGTCACCGACATAGATACAAGTGGCATCCATGCCTTTGAAGAGTTACAGAGAAGTCTTGAGAAGAGAGATGTTCAGCTCGTGCTATCAAACCCAGGGGCGGTGGTGATAGAGAAGCTCCAAAGATCCAAATTTGTGTATAAGATAGGGGAGGACAAGATCTTTGTGACAGTTGCAGATGCGGTTTCATTCTGTTGTTCCAAGGTGAAGGTGGCTGAGAAGCCTAGCTTGCACACTCTCTCCGACTTATGA 1677 0.4246 MPAISYSKIYCDLFFFLHHRWKSGLTCSMDHQDDENLQTKEVPLSSHDQAPYIHRVGSPQRQNLFKDFQSTLKETLFAGDPLRSFKDQPMSPQVAYIFPLDVGFRVLLSFLFTDSSFVPPLVYAVMGSSRDIAIGQVAVVSLLLGSSLQNEIDPVTNAAEYRRLAFTATFFAGISQAALGVFRLGFLIDFLSHAAIVGFMGELLSQFPFNSLRGKKAKKLFWIPAIAPLISIVLSTSPVYLTREDKQGVEIARHIEKGINPSSVHEIYFTGDYLRKGFRIGIVAGMIALTEATAIGRTFASMKDYQIDGNKEMVALGAMNVVGSLTSCYVATGSFSRSAVNYMAGCQTSISNVVMSFVVFLTLKFITPVFKYTPNAILSAIIISAVINLVDFKAAVLIWKIDKFDFVACMGAFFGVVFCSLEIRTSDCPKKAKTPSSMSKFICIVYTILRWLMDEEEKSIEEYRTRIQFLVVEMSPVTDIDTSGIHAFEELQRSLEKRDVQLVLSNPGAVVIEKLQRSKFVYKIGEDKIFVTVADAVSFCCSKVKVAEKPSLHTLSDL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0343 558 Pfam STAS domain 455 536 IPR002645 -
Lele28g0343 558 ProSiteProfiles STAS domain profile. 452 540 IPR002645 -
Lele28g0343 558 Gene3D STAS domain 437 546 IPR036513 -
Lele28g0343 558 CDD STAS_SulP_like_sulfate_transporter 458 533 - -
Lele28g0343 558 PANTHER SULFATE TRANSPORTER 115 201 IPR001902 GO:0016020|GO:0055085
Lele28g0343 558 SUPERFAMILY SpoIIaa-like 463 540 IPR036513 -
Lele28g0343 558 Coils Coil 453 473 - -
Lele28g0343 558 Pfam Sulfate permease family 213 410 IPR011547 GO:0016020
Lele28g0343 558 Pfam Sulfate permease family 115 201 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0343 Lele-ChrLele28 2084176 2087698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0343 31 544 Inorganic Solute Cotransporters AT1G22150 51.464 0.0 560
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0329 25 1986305 1989363 Lele28g0343 28 2084176 2087698 hybridization
Lele26g0344 26 2055307 2058828 Lele28g0343 28 2084176 2087698 hybridization