Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0333 ATGCCCTGTCAGACGATGGCTTCTATCTGCATCCCCCGCGCTGTTGCACAGCCCGCCACAACTTTTCCCAGCTGGAAGTCTTTCAGAGAAAGGAAAACTGATTTGCAGACAGGAATCCCTCGCAGTGTTCACATGGAGAACTTGCAGAACGAATATTTGTTTCCTGAGATATTCATGCGGGAATCTGAACATGCCCGGAAGAATCCACATGCGAGAGTAATCAGACTTGGTATTGGTGACACCACACAACCAATTCCCAACATCATAACTTCTGCTATGGTTGAGAAAACACTTGCTTTGTCAACAGTTCAAGGTTACAGTGGATATGGACCAGAGCAAGGAAACGGGGAATTAAGGAAGGCAATAGCTGAAAGATTTTACCGGGGTTCACTCGTGAAGGAGAATGAGGTTTTTGTATCCGACGGCGCACAGTGCGATATTTCACGCATTCAGATGCTTCTAGCATCTAGCTTGACGGTGGCTGTACAGGACCCAACTTTTCCGGCGTATGTAGATTCAAGTGTAATTGTGGGCAGAGCAGGCAGGTTCCAAGCAGAAACACAGAAGTACAGAAACATAGTGTACATGAAGTGTGTGCCGGAGAATAATTTCTTCCCAGATTTATCAGCTACTCCAAGGGCAGATGTTATTTTCTTCTGTTCTCCAAACAATCCGACCGGTAATGCAGCGACTCGGCAGCAGTTGAAGCAACTAGTGGATTTTGCAAAAGCAAATGGATCCATAATCATATATGACTCAGCATATGCTGCTTTTATATCTGATGAAAGCCCAAGATCAATATTTGAAATCCCAGGAGCCAAAGAGGTGGCAATTGAAATCTCATCATTCTCCAAATTTGCTGGTTTCACTGGGGTCCGCCTAGGTTGGACCGTTGTCCCAGAGAAACTATTGTACTCCAATGGATATCCTGTGATCAAGGATTATAATCGCCTTGTATGCACCAGTTTCAATGGTGCTTCAAATATTGTTCAAGCTGGTGGACTGGCCTGCCTTTCTGATGAAGGTTTTCCGGCACTGGGTAAAGCTGTGAATTATTACAGGGAGAATGCGAAAATTCTGGTGGACACGTTTGAATCGCTTGGGCTGAAGGTGTATGGAGGCAAAAACGCACCTTACGTGTGGGTACATTTTCCGGGGAGAAAATCGTGGGACGTGTTCAACAAGATTCTGCAGAAAGCGGACATAGTCACCGTCCCGGGGATAGGATTTGGACCGGGCGGCGAGGGGTTTATTAGAGTCAGCGCATTTGGTCGTAGAGACAGTATATTGGAAGCTTCAATGAGGCTACGACAATTTCTTTAG 1323 0.4588 MPCQTMASICIPRAVAQPATTFPSWKSFRERKTDLQTGIPRSVHMENLQNEYLFPEIFMRESEHARKNPHARVIRLGIGDTTQPIPNIITSAMVEKTLALSTVQGYSGYGPEQGNGELRKAIAERFYRGSLVKENEVFVSDGAQCDISRIQMLLASSLTVAVQDPTFPAYVDSSVIVGRAGRFQAETQKYRNIVYMKCVPENNFFPDLSATPRADVIFFCSPNNPTGNAATRQQLKQLVDFAKANGSIIIYDSAYAAFISDESPRSIFEIPGAKEVAIEISSFSKFAGFTGVRLGWTVVPEKLLYSNGYPVIKDYNRLVCTSFNGASNIVQAGGLACLSDEGFPALGKAVNYYRENAKILVDTFESLGLKVYGGKNAPYVWVHFPGRKSWDVFNKILQKADIVTVPGIGFGPGGEGFIRVSAFGRRDSILEASMRLRQFL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0333 440 Pfam Aminotransferase class I and II 72 422 IPR004839 GO:0009058|GO:0030170
Lele28g0333 440 FunFam LL-diaminopimelate aminotransferase, chloroplastic 83 340 - -
Lele28g0333 440 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 42 438 IPR019942 GO:0008483
Lele28g0333 440 Gene3D Aspartate Aminotransferase, domain 1 53 436 IPR015422 GO:0003824
Lele28g0333 440 PANTHER AMINOTRANSFERASE 27 439 IPR019942 GO:0008483
Lele28g0333 440 Gene3D - 83 340 IPR015421 GO:0003824
Lele28g0333 440 Hamap LL-diaminopimelate aminotransferase [dapL]. 40 439 IPR019942 GO:0008483
Lele28g0333 440 CDD AAT_like 74 438 - -
Lele28g0333 440 SUPERFAMILY PLP-dependent transferases 51 436 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0333 Lele-ChrLele28 2011177 2014160 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0333 28 2011177 2014160 Lele01g0366 01 2118531 2121885 CCT
Lele28g0333 28 2011177 2014160 Lele03g0371 03 2129294 2132641 CCT
Lele28g0333 28 2011177 2014160 Lele04g0367 04 2173145 2176492 CCT
Lele25g0319 25 1926844 1929825 Lele28g0333 28 2011177 2014160 hybridization
Lele26g0331 26 1988675 1991670 Lele28g0333 28 2011177 2014160 hybridization