Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0320 ATGGGCAAACCAAATTTCTCCACGTGGTGCCGTGTTTTCTGCCTTTTTGTCCGCAGTGGCGTTTACCGGTTTGGTCCTTCTTCTGCTCACTTTTCGTCCTCAGCCATTTCACCTCGCATCCCGGTGTCTGCGTTGGGGTGGTCTATGATCCTGACCACAGTCCCTGATCAAAACCTATGTCATGCTTTTAGATGGACTTGGTTCTCTATGCATCACCTACCTCGTTTATTCGGTTTCAGAAAGGAAAAAAAGGGCATGGACCCGAATAAAGTCCGAAGAAAACCCCGGCTCGATCGCAGCAATGCTGTCAAGTGTGCTGAGTATGATGCTGGGTCGTCTTCGTCGTCTCTAGACAGCTGGAGTGGATCCCTCTACACTCGATCAACGGAGTTCTGTGATCGAACCAGCTTCCGAATTGCGGGAGTTGAGGGTGAGGTTGATCGCATATGCAGAGGTTTGGGGCTTTCAGGACCTGAAGACTTCTCCATCCCTGCGGCGGAGTGGGACGCTATGAAAATTATATCGTCTTCGGATATTACACCAAGTTCGAAGATGAACGAGTTAGAAGGTCAGGAGAATGAGGAATTACAAGACGAGATTCCAGTAGTGGGTGACTTAGGTTACAGCGTCGAAGAAAGGATTACAGTTAGATGTCTAGCTGAGTCAACGCAAGATGAGCCTGCTGAGACTAGTGGGTGCTGCAATGCTGGTGCTGGTGTTTGCGGAACCAGTGTCGGAGTAGATTCTGTTGAAATTGAAGTTGTCTTAGATGCAATTCTTTTAGTTGGCATCCTTCTTCCATGTCAATTTCATTTTACTGTAAGGCTAACTGCAATTTCTTTTCTGGTATCTCTGGATTATGATTATAGAGATGGATTCTTTTTTGCTGTAAAGGAAGTTTCACTACTTGATCAAGATGACCAGGGAAGGCAAAGTGTCTATTGCCTGGAGCAGGATCAATCAAAGCTGTACATTTTTATTGAGCTTGTGACTAAAGGTTCCCTTGCAAATCTTTATCGGCGGTACAATCTCCGAGACTCCCAAGTATCTGCCTACACAAGACAGATTCTGCACGGTTTAAAGTATCTTCATGACCAAAATGTGATTCACAGGGATATTAAATGTGCAAATATACTGGTAGATGCAAATGGATCTGTCAAGCTTTCAGATTTTGGATTGGCAAAGTCAACCAAACTGAATGATATTAAGTCGTGCAAGGGGACACCATTCTGGATGGCACCTGAGGTCTGCTTTAATTCTTCTCGTCAGAACAGAATTATTGGAATAATATTGGTTGTGAAAGGAAAGAATCAAGGTTATGGACTTCCAGCTGATATATGGAGTCTGGGATGCACTGTGCTTGAGATGTTAACGGGCCAAATTCCATACTCTCATTTGGAATGTTATCCCATACTACACATAAGCCCATTTTCACAAAGAGGTTCATTTTCAGTCAATAGCATGAATACCGCTGGGCTTATTCTCTTGGTGATAATGCCTTCTGAATCAGTTATGATACCGATAACAATTGGCAGCCCCGATGTTCCTCAGCTGAGCTCATTTGTAGCTAACTTGCAAGTCATGGCTATTGTCCAGATGCAGGCTTTGTTTAGAATCGGAAAGGGTGAGCGCCCTCTTGTTCCTGACTCTCTTTCAAGAGATGCGCAAGATTTTATCCTGCAGTGTCTTCAAGTCAATCCTGATGATCGTCCCACTGCTGCCCAGCTTTTAAACCATCAATTTGTCCAAAGGCCTCTTTCCACATTCTCTGGCTCTGCATCTCCTTATATACCTGCCAGAAGGGGTTCAATTTAG 1815 0.4452 MGKPNFSTWCRVFCLFVRSGVYRFGPSSAHFSSSAISPRIPVSALGWSMILTTVPDQNLCHAFRWTWFSMHHLPRLFGFRKEKKGMDPNKVRRKPRLDRSNAVKCAEYDAGSSSSSLDSWSGSLYTRSTEFCDRTSFRIAGVEGEVDRICRGLGLSGPEDFSIPAAEWDAMKIISSSDITPSSKMNELEGQENEELQDEIPVVGDLGYSVEERITVRCLAESTQDEPAETSGCCNAGAGVCGTSVGVDSVEIEVVLDAILLVGILLPCQFHFTVRLTAISFLVSLDYDYRDGFFFAVKEVSLLDQDDQGRQSVYCLEQDQSKLYIFIELVTKGSLANLYRRYNLRDSQVSAYTRQILHGLKYLHDQNVIHRDIKCANILVDANGSVKLSDFGLAKSTKLNDIKSCKGTPFWMAPEVCFNSSRQNRIIGIILVVKGKNQGYGLPADIWSLGCTVLEMLTGQIPYSHLECYPILHISPFSQRGSFSVNSMNTAGLILLVIMPSESVMIPITIGSPDVPQLSSFVANLQVMAIVQMQALFRIGKGERPLVPDSLSRDAQDFILQCLQVNPDDRPTAAQLLNHQFVQRPLSTFSGSASPYIPARRGSI 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0320 604 SMART serkin_6 270 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0320 604 Gene3D Transferase(Phosphotransferase) domain 1 503 590 - -
Lele28g0320 604 ProSiteProfiles Protein kinase domain profile. 230 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0320 604 Gene3D Transferase(Phosphotransferase) domain 1 287 488 - -
Lele28g0320 604 Pfam Protein kinase domain 317 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0320 604 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 314 595 - -
Lele28g0320 604 SUPERFAMILY Protein kinase-like (PK-like) 285 583 IPR011009 -
Lele28g0320 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0320 Lele-ChrLele28 1930775 1939915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0320 291 586 MAP Kinase Kinase Kinase AT4G08500 47.319 2.61e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele28g0320 Pkinase 3e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0320 28 1930775 1939915 Lele01g0361 01 2093193 2096854 CCT
Lele28g0320 28 1930775 1939915 Lele02g0354 02 2048478 2052118 CCT
Lele28g0320 28 1930775 1939915 Lele03g0366 03 2105659 2109345 CCT
Lele28g0320 28 1930775 1939915 Lele04g0361 04 2143867 2147477 CCT
Lele25g0311 25 1867188 1877110 Lele28g0320 28 1930775 1939915 hybridization
Lele26g0319 26 1906138 1916298 Lele28g0320 28 1930775 1939915 hybridization