Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0315 ATGCGAGAGGCAGCAGCAATGGAGGATTTGCAGGGTGCTCTGAAGGATTGTAATTTAACGGTTTCCACCGTGCCAGATAAGGGCCGCTGTCTCCTAGCTACGAGAGATTTTTACCGAGGAGACGTAATTATAAGCCAAGAGCCTTATGTGTGTGTCCCAAATAATTCCTCAGCCGAAACTAGGTGTGATGGATGTTTCACAAGAAGTAAACTCAAAAAGTGCTCTGGTTGTCAAGTTGTATGGTATTGTGGAAGCACATGCCAGAGGGCAGAGTGGAAGTTGCATCGTCTAGAATGTGAAGTCTTCTCAAGGCTGGAAAAGAACAAGAGAAAATCTGTCACACCATCCATTCGACTGATGGTAAAACTTTATCTCCGAAGGAAGTTGCAAAGTGAAAAGGTTATCCCAAGCACTACTACAGATAACTATAACTTGGTGGAGGCTTTAGTGTCACACATGTCTGACATCAACGAGGAACAGCTGGTTCTGTACGCACAGATGGCTAATCTTGTAAACTCAATATTACAGTGGCCTGACATTAACATAAAAGAGATTGCAGAAAATTTTTCCAAGTTTGCTTGCAATGCGCATACCGTTTGTGACAGTGAACTGAGACCCTTGGGGACAGGATTGTATCCAGTAATTTCCATAATCAACCACAGTTGCTTGCCCAATTCAGTGTTGGTTTTTGAGGGAAGGTCAGCTGTGGTACGTGCTGTACAACATATACCCGAAGGTTCGGAGGTGCTGATAAGTTATATAGAGACTGCTGGGAGCACTATGACTCGGCAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGCGCCTGTCCCCGTTGTGCTAGAATGGGTCAATCTGATGATATTCGAGAAAGTGCAATTTTGGAAGGATACAGATGCAAGAATGAAAAATGCTGTGGTTTCTTGATTCGTACTAATGATGGAAAGGGATTCCAATGCCAAGAATGTGGACTAGTCAGGGACATGGAAGAGATAAAGCTTATTGCAACGGAAGTAAAATCACTGTCTGAAGAAAAAGCTCCTAAACTTCATACAACTGGCAATTATCAGGAAGCTGTTGCTGTATACAAAATACTTGAGAAATTCCAATCAGAATTGTACCATCCCTTTTCAATCAGCTTGATGCAGACTCGAGAAAAACTTTTGAAGTTATTGATGGAGCTGGAACATTGGAGAGAAGCTCTGGCATACTGCAAATTGACCTTACCAGTCTATCAAAGAGTTTATCCAGCAGTTCATCCATTGCTTGGTTTGCAATATTATACTTGTGGAAAGCTTGAATGGTATCTGGGGGACACGGAGGGTGCGGTTAAATCGCTGACGAAGGCAGTGGATGTACTAAGAATCACTCATGGGACAAACACACCTTTCATGAAGGAACTGTTAATGAAGTTGGAAGAAGCCCGTGCAGAAGCCTCTTACCAGCAGTCCTCCAAAGACGAGTAG 1467 0.4322 MREAAAMEDLQGALKDCNLTVSTVPDKGRCLLATRDFYRGDVIISQEPYVCVPNNSSAETRCDGCFTRSKLKKCSGCQVVWYCGSTCQRAEWKLHRLECEVFSRLEKNKRKSVTPSIRLMVKLYLRRKLQSEKVIPSTTTDNYNLVEALVSHMSDINEEQLVLYAQMANLVNSILQWPDINIKEIAENFSKFACNAHTVCDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSAVVRAVQHIPEGSEVLISYIETAGSTMTRQKALKEQYLFTCACPRCARMGQSDDIRESAILEGYRCKNEKCCGFLIRTNDGKGFQCQECGLVRDMEEIKLIATEVKSLSEEKAPKLHTTGNYQEAVAVYKILEKFQSELYHPFSISLMQTREKLLKLLMELEHWREALAYCKLTLPVYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEGAVKSLTKAVDVLRITHGTNTPFMKELLMKLEEARAEASYQQSSKDE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0315 488 Pfam SET domain 28 253 IPR001214 GO:0005515
Lele28g0315 488 Gene3D Tetratricopeptide repeat domain 408 487 IPR011990 GO:0005515
Lele28g0315 488 ProSitePatterns Zinc finger MYND-type signature. 62 99 IPR002893 -
Lele28g0315 488 SMART set_7 17 260 IPR001214 GO:0005515
Lele28g0315 488 SUPERFAMILY SET domain 12 253 IPR046341 -
Lele28g0315 488 Pfam MYND finger 62 99 IPR002893 -
Lele28g0315 488 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 21 474 - -
Lele28g0315 488 Gene3D - 61 111 - -
Lele28g0315 488 SUPERFAMILY TPR-like 349 453 IPR011990 GO:0005515
Lele28g0315 488 Gene3D - 112 196 - -
Lele28g0315 488 ProSiteProfiles SET domain profile. 17 254 IPR001214 GO:0005515
Lele28g0315 488 ProSiteProfiles Zinc finger MYND-type profile. 62 99 IPR002893 -
Lele28g0315 488 Gene3D SET domain 30 280 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0315 Lele-ChrLele28 1870271 1874751 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele28g0315 SET 8.7e-15 No_clan