LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g0314	ATGAAGCCCATTGAGCCCACTATCCCTGGCATTACCGCCAAACGGGACAATTCAAAAGCTGTTTCTGTCCGTCTACGATCCCAGAAGCGGGCACTCGACAAATTTCCCGGTAACGGGATTCTTCAAATCATCAATAAATGCCGTGGAGATTACTCCATGGACGGGAAGGCTAACCTTCCGGTCTCACCCCCGACTGCCAAGTGCCTGTTCCGCCCAACCAATCCCGATACTACATCGTCTTCCTCATCCTCCCTCTCTTCTTCCTCACCGCCGGACTTCCTCCGGCATGTTCAAGCCGCCTTCAAGCGTCATCGTCCTCTCGGTACAGTGCAATCAAATATAAGACCAAGGCGCATGATGGTTCCTCAACGTGAGGTGTCAAGAAATTCTTCACTGAAAGTCTGTCCAAATGTAGATAATAAGAAGTCCCAGGAGATATCTTTAAGTAAGGTTCAGGCGGAGATGGAGTCATGTGCACATAGAAATAGCACGACTTCGATGATTGGAGAAGGTCAAGAGGACGTATTAATCACGCCTCCTTCTGTTTCTGGTAGTTGCCACAATGCACTTGACAAAGGATGCAATCCATTCAATGCACAAGAATGTCATTTAAAGGTAATGACTAATTGTAAAGACAAGGTTGCCATGCATTCTTTGCCAGTGGGATCTCAAAATGTAGATGGTCAGAAGAAAGTCCAGTTCTTAGTAGGAAACAACACTGCTGCCCAGGGGGCCGATGATGGAAAGGCCACTGAGTTGGAGAACTTATCATCTCATATGGGTTCACTTGCATTGACAGAAATGGAATGGGCTGCAAGCACCCAGCCGGAAGAATTTAATTTATTCAATCAAGATCCAAAGCACCAAAGTGTTTTGCAGGCAGAGTCTGAACTAACTTTGAGATCCGATGGAGGATTAAATTCCCAGTTGGCGAAAAGAACAACAGCTATTCAGGATCATCTGCATCAATTCAGAAACTTTTTAAGTCAGCCAGCTACTCAATCTTCAGTAGTGGGACCTTCATGTGCTACCACAACATCTGTCCATTCATCTTCAGCTCCTATGCTAAATTCAACAACCCATTATTCTCATTCACATATTGATAGTGGTTCACATGCAGCGGCAGAACCTTTGAGGGAAAATAATGTTAGTAGTTATCCGATAACTCAAGTAGTTGTGAAATCATCTAGCACTTACCTAAAAGAGACCAATAAAATGTCAGTGGATCAAGCAGCACTTGCATCTAGTTCTGCCACGACTACAGGGTTACCATCTAAGGATGGTGACCTATGTAAGGAGCAGCAAGGCAGCATGCTAAAGGAAAGTAACATTTCTAAAACTACTTGTGATGATAAGCCATCTAAGGGGAAAGAATATGCAGATGTTACCAACTTACAACCCCAGGCTCCAATGTCTAGGACTTCATTTTCAGATGCTAGGTTGGACTCATCTAAGTCAGATAAACAAGAGAAGGCAGTAAGTAGTAAAGGCACATCAACTACTCGGAAAAGGGCCTATGACCCTGATATGTTTTTCAAAGTAAATGGTAAGCTGTATCAAAGGCTTGGCAAGATAGGTAGTGGAGGAAGTAGTGAAGTACACAAAGTAATATCATCAGACTGTACAATCTATGCACTTAAAAAGATCAAGCTAAAGGGTCGTGATTATGCCACTGCATATGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAAGGGAAAGAATAATATTATTCAGCTGATTGACTATGAGGTGACTGACGAGACTTTGCTTGAAGAAGTCCTGAGAGGCTCCTTGAGTAGTAAAGACAGCCGAGTCAAGGATGATGGATATATATACATGGTTCTTGAATATGGGGAAATTGATTTGGCTCATATGCTGTCTCAGAAGTGGAAGGAACTGGATGGACACAACCAGACCATAGATGAGAATTGGCTTCGATTTTATTGGCAGCAAATACTTCAAGCTGTCAATACAATACACGAGGAACGTATAGTGCACTCTGACCTGAAGCCAGCTAATTTTCTTCTCGTCAAAGGTTCCCTAAAACTGATTGATTTTGGCATAGCCAAAGCAATAATGAGCGATACAACGAATATCCAACGGGATTCACAGGTGGGTACTCTGAGTTACATGTCTCCAGAGGCATTTATGTGCAATGAGAGTGATGCAAATGGAAATATCATAAAGTGTGGCCGACCATCGGATATTTGGTCTCTGGGCTGCATTCTCTATCAAATGGTATACGGGAGGACGCCATTTTCGGAGTACAAGACGTTCTGGGCCAAATTCAAGGTCATAACAGATCCAAATCATGAAATTACGTATGAGCCCGTTTCAAACCCATGGCTTCTGGATCTCATGAAGAGGTGTCTAGCATGGGACCGTAATGAAAGATGGAGAATTCCTCAGCTTCTCCAACATCCGTTTCTTGTTCCGCCAACTCCGCCACAGCCTTCCCTGTCCCAAGACCAAAGCTTTCAATTGCTACAATTTATAGCTGAAACTTGTATAGATGACCCAGAAGCTTCAAAGCTCTGTTGTCAGCTCCAGCAGGTGGTTAGTGATCCACTCAAGTTAATAACTCCCCACTCTCCTAGCTCACGAGATCAACAATGTAAACTATTGTCCCAATTGTCAGAACTTTGCCTCCAGCTGCATGAGCGGCTAAAAACTTAG	2682	0.4355	MKPIEPTIPGITAKRDNSKAVSVRLRSQKRALDKFPGNGILQIINKCRGDYSMDGKANLPVSPPTAKCLFRPTNPDTTSSSSSSLSSSSPPDFLRHVQAAFKRHRPLGTVQSNIRPRRMMVPQREVSRNSSLKVCPNVDNKKSQEISLSKVQAEMESCAHRNSTTSMIGEGQEDVLITPPSVSGSCHNALDKGCNPFNAQECHLKVMTNCKDKVAMHSLPVGSQNVDGQKKVQFLVGNNTAAQGADDGKATELENLSSHMGSLALTEMEWAASTQPEEFNLFNQDPKHQSVLQAESELTLRSDGGLNSQLAKRTTAIQDHLHQFRNFLSQPATQSSVVGPSCATTTSVHSSSAPMLNSTTHYSHSHIDSGSHAAAEPLRENNVSSYPITQVVVKSSSTYLKETNKMSVDQAALASSSATTTGLPSKDGDLCKEQQGSMLKESNISKTTCDDKPSKGKEYADVTNLQPQAPMSRTSFSDARLDSSKSDKQEKAVSSKGTSTTRKRAYDPDMFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKNNIIQLIDYEVTDETLLEEVLRGSLSSKDSRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGHNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWDRNERWRIPQLLQHPFLVPPTPPQPSLSQDQSFQLLQFIAETCIDDPEASKLCCQLQQVVSDPLKLITPHSPSSRDQQCKLLSQLSELCLQLHERLKT	893

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g0314	893	Gene3D	Transferase(Phosphotransferase) domain 1	633	815	-	-
	Lele28g0314	893	Gene3D	Phosphorylase Kinase; domain 1	512	597	-	-
	Lele28g0314	893	PANTHER	MIXED LINEAGE PROTEIN KINASE	78	843	-	-
	Lele28g0314	893	MobiDBLite	consensus disorder prediction	465	479	-	-
	Lele28g0314	893	ProSiteProfiles	Protein kinase domain profile.	519	812	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele28g0314	893	SMART	serkin_6	519	812	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele28g0314	893	Pfam	Protein kinase domain	519	812	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele28g0314	893	CDD	PKc_Mps1	517	812	-	-
	Lele28g0314	893	MobiDBLite	consensus disorder prediction	334	367	-	-
	Lele28g0314	893	MobiDBLite	consensus disorder prediction	436	502	-	-
	Lele28g0314	893	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	666	678	IPR008271	GO:0004672\|GO:0006468
	Lele28g0314	893	ProSitePatterns	Protein kinases ATP-binding region signature.	525	547	IPR017441	GO:0005524
	Lele28g0314	893	FunFam	serine/threonine-protein kinase mph1 isoform X2	512	599	-	-
	Lele28g0314	893	MobiDBLite	consensus disorder prediction	334	374	-	-
	Lele28g0314	893	MobiDBLite	consensus disorder prediction	71	92	-	-
	Lele28g0314	893	FunFam	serine/threonine-protein kinase mph1 isoform X1	633	815	-	-
	Lele28g0314	893	MobiDBLite	consensus disorder prediction	69	92	-	-
	Lele28g0314	893	SUPERFAMILY	Protein kinase-like (PK-like)	514	824	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g0314	Lele-ChrLele28	1862685	1867407	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g0314	525	813	MAP Kinase Kinase Kinase	AT4G08470	28.669	4.36e-23	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Lele28g0314		Pkinase	5.4e-56	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g0300	25	1790697	1796058	Lele28g0314	28	1862685	1867407	hybridization
	Lele26g0310	26	1826054	1830826	Lele28g0314	28	1862685	1867407	hybridization