Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0303 ATGTCTTTGAGTCCTCCTCGCGCCAGAACAAGCTATCAGCTTTACTGGTGCTTGCGCTGTAATCGACTGGTCGCGCTCGCCCCCACCTCCCCATCCGACATTATCTGCCCTCGTTGTTTTCAACACTTCCTCTGTGAATTCAACCTCCCAAGACCCACGCTTCTCGCCGGTTTCACCAATCCCCGTCCTTCCCCTGAAGCGCGTTTGCTTGATGCCCTTTCTCTCGTGCTTGACCAACCCGTCCGCCGCTTCGGCAGCCGCTTCTCCGATCCTGAATATGAGCACCCACACTTTGCCAGGATTCACGGGAGACCTCACGAATATGAAGGCCGAACCCGTGAGAACCCACGTGTTGAAATTCCGGTTCGTCGCATAAGACGTCCTCGACATCTAAGTTTTGATGCCGGAGCTGGTGGTTTCGATCCAGAACCAGAAACCCAACCTCGTCCTCGGAGTCGGCTTATTGTTCGACCTGTCGATCGTTCCAACTCATTCGAACGGGTTCCTCGGCTACAAGATTCAATCCAACGACGGGTTGATCCGAGAGACTACTTTTTCGGGCCGGGGCTCAACGAACTGATTGAACAACTGACGGAAAATGACCGGCAAGGCCCACCTCCAGCTCCGGACAGAGCCATCGAAGCAATTCCGACCGTGAAAATAGTGGAGGCCCATTTAAAGGAGAACCCTCATTGCCCGGTCTGCCAGGAGGAGTTTGAAGTGGGTGGTGAGGCAAAGGAGTTAGCCTGCAAGCATGTATACCATTCTGATTGCATCGTGCCATGGCTAAAGCTCCACAATTCTTGCCCCGTTTGCCGGCACGAGGTGCGGGTGCATTCTGACTACGACGAATCAGGTGGCGGTGGAAGGTTGCGGCGGTGTTTGAGGTGGAGTCAGTTGGCTTTACTTTGGCCTTTCCATGGAAGGTTCCGACGGGTTAACCCAGAAGGGGGCTAG 957 0.5465 MSLSPPRARTSYQLYWCLRCNRLVALAPTSPSDIICPRCFQHFLCEFNLPRPTLLAGFTNPRPSPEARLLDALSLVLDQPVRRFGSRFSDPEYEHPHFARIHGRPHEYEGRTRENPRVEIPVRRIRRPRHLSFDAGAGGFDPEPETQPRPRSRLIVRPVDRSNSFERVPRLQDSIQRRVDPRDYFFGPGLNELIEQLTENDRQGPPPAPDRAIEAIPTVKIVEAHLKENPHCPVCQEEFEVGGEAKELACKHVYHSDCIVPWLKLHNSCPVCRHEVRVHSDYDESGGGGRLRRCLRWSQLALLWPFHGRFRRVNPEGG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0303 318 FunFam E3 ubiquitin-protein ligase RING1-like 196 279 - -
Lele28g0303 318 SUPERFAMILY RING/U-box 212 279 - -
Lele28g0303 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 163 276 - -
Lele28g0303 318 Pfam Ring finger domain 231 273 IPR001841 -
Lele28g0303 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 278 IPR013083 -
Lele28g0303 318 MobiDBLite consensus disorder prediction 131 151 - -
Lele28g0303 318 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Lele28g0303 318 ProSiteProfiles Zinc finger RING-type profile. 232 273 IPR001841 -
Lele28g0303 318 SMART ring_2 232 272 IPR001841 -
Lele28g0303 318 CDD RING-H2_RNF126_like 232 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0303 Lele-ChrLele28 1796486 1797442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0303 204 306 C3H Transcription Factor Family AT1G68180 46.018 3.28e-26 102